View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12331_low_22 (Length: 248)

Name: NF12331_low_22
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12331_low_22
NF12331_low_22
[»] chr4 (4 HSPs)
chr4 (77-235)||(44185462-44185620)
chr4 (23-235)||(4875962-4876189)
chr4 (23-201)||(1326370-1326563)
chr4 (20-59)||(44185423-44185462)
[»] chr3 (1 HSPs)
chr3 (23-235)||(5387554-5387781)
[»] scaffold0831 (2 HSPs)
scaffold0831 (102-190)||(2047-2135)
scaffold0831 (41-105)||(2146-2211)
[»] chr8 (4 HSPs)
chr8 (114-191)||(26531587-26531664)
chr8 (56-107)||(27183114-27183166)
chr8 (56-107)||(27231119-27231171)
chr8 (51-105)||(26531509-26531564)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 44185462 - 44185620
Alignment:
Q  77 tgtgctccaaatcatggtctcttttatttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44185462 tgtgctccaaatcatggtctcttttatttcatgcaattgttccacaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaa 44185561  T
Q  177 atattaaggagatatcaccacatcctcgagacggtttcaatctgtatttgctctctgct 235  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  44185562 atattaaggagatatcgccacatcctcgagacggttccaatctgtatttgctctctgct 44185620  T

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Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 4875962 - 4876189
Alignment:
Q  23 atttcgttttctattctttccaaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttatttca-------------- 107  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| |||||||||| |||||||||||||||                  
T  4875962 atttccttttctattctttccaaattacccctccaatctctcaattgatttacatgtgcctccaaatcatcgtctcttttatttcaaaaccctaatttca 4876061  T
Q  108 tgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatcaccacatcctcgaga 207  Q
    || |  ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||  |||||||| |||||    
T  4876062 tgaacatgttccgcaccaatttcatatctatgcatcgatcattgtacgatcacacttatctctttctaaatattaaggagatattgccacatccacgaga 4876161  T
Q  208 cggtttcaatctgtatttgctctctgct 235  Q
    ||||| ||||||||||||||||||||||    
T  4876162 cggttccaatctgtatttgctctctgct 4876189  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 1326370 - 1326563
Alignment:
Q  23 atttcgttttctattctttccaaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttat--------------ttca 107  Q
    ||||| || |||||||||||||||||||| |||||||||||||| |||||||| ||||| | |||| ||| |||||||||||              ||||    
T  1326370 atttccttctctattctttccaaattacctctcaaatctctcaaacgatttacgtgtgcatgcaaaccatagtctcttttatttcaaaacccttatttca 1326469  T
Q  108 tgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatcaccacatcc 201  Q
    |||   |||| |||||||||||||||||||||||| | ||| |||||||| |||| ||||||||||| ||||| ||||||||||  ||||||||    
T  1326470 tgcctatgtttcgcaccaatttcatatctatgcattgttcactgtacaatgacacatatctcttccttaatataaaggagatattgccacatcc 1326563  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 44185423 - 44185462
Alignment:
Q  20 gaaatttcgttttctattctttccaaattacccctcaaat 59  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44185423 gaaatttcgttttctattctttccaaattacccctcaaat 44185462  T

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Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 5387554 - 5387781
Alignment:
Q  23 atttcgttttctattctttccaaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttattt--------------ca 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||              ||    
T  5387554 atttccttttctattctttccaaattacccctcaaatctctcaatcgatttacctgtgcctccaaatcttggtctcttttatttcaaaaccctaatttca 5387653  T
Q  108 tgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatcaccacatcctcgaga 207  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||| |||| ||||| |||| ||||||||||  |||||||||| |||    
T  5387654 tgcaattgttccgcaccaatttcatatttatgcatcgctcattgtatgatcacacctttctcatcctatatataaaggagatattgccacatcctcaaga 5387753  T
Q  208 cggtttcaatctgtatttgctctctgct 235  Q
     |||| ||||||||||||||||||||||    
T  5387754 tggttccaatctgtatttgctctctgct 5387781  T

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Target: scaffold0831 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 2135 - 2047
Alignment:
Q  102 atttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagata 190  Q
    |||||||| || |||| |||| ||||||||||| ||||||||| |||||||||||| |||| | ||| ||||||||||| |||||||||    
T  2135 atttcatgaaaatgtttcgcaacaatttcatatttatgcatcgatcattgtacaatgacacatgtcttttcctaaatataaaggagata 2047  T

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Target: scaffold0831; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 2211 - 2146
Alignment:
Q  41 tccaaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttattt 105  Q
    |||||| |||| || ||||||||||| |||||||||||||| | ||| ||||||||||||||||||    
T  2211 tccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttattt 2146  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 26531587 - 26531664
Alignment:
Q  114 tgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatat 191  Q
    |||||||||  |||||||||||||||||||  |||||||||||  |||| |||||||| |||||||| ||||||||||    
T  26531587 tgttccgcaaaaatttcatatctatgcatcagtcattgtacaacaacacttatctctttctaaatataaaggagatat 26531664  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 27183114 - 27183166
Alignment:
Q  56 aaatctctcaatcgatttacttgtgct-ccaaatcatggtctcttttatttca 107  Q
    ||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  27183114 aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttca 27183166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 27231171 - 27231119
Alignment:
Q  56 aaatctctcaatcgatttacttgtgct-ccaaatcatggtctcttttatttca 107  Q
    ||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  27231171 aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttca 27231119  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 26531509 - 26531564
Alignment:
Q  51 ccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttattt 105  Q
    |||||||||||||||| || ||||||||||| | ||||||||||||||||||||||    
T  26531509 ccctcaaatctctcaagcggtttacttgtgcgtgcaaatcatggtctcttttattt 26531564  T

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