View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12331_low_3 (Length: 781)
Name: NF12331_low_3
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 354 - 768
Target Start/End: Complemental strand, 20165218 - 20164782
Alignment:
| Q |
354 |
cctaattaaagagagagaaagataccttcaagaacatgatcttcaggaccaagagaagaatcaccacaaacatcacaaacaactcttccacgaatttcac |
453 |
Q |
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| T |
20165218 |
cctaaataaagagagagaaagataccttcaagaacatgatcttcaggaccaagagaagaatcaccacaaacatcacaaacaactcttccacgaatttcac |
20165119 |
T |
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| Q |
454 |
cggtccaaccacttacactcaaaacaaacaccatcatcaacaatacaatcaattccactatcatcttctgcttcattgcttccattgtcaaaactc-nnn |
552 |
Q |
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| T |
20165118 |
cagtccaaccacttacactcaaaacaaacaccatcatcaacaatacaatcaattccactatcatcttctgcttcattgcttccattgtcaaaactcaaaa |
20165019 |
T |
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| Q |
553 |
nnnnnnnnnnnnnnncgcactttctcgaataacactgattttgcgcttatgggc---------------tgttttccaccgacactcgctgaatcactga |
637 |
Q |
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| T |
20165018 |
aacacacaaaaaaaccgcactttctcgaataacactgattttgcgcttatgggctgtttttgattttgatgttttccaccgacacccactgaaccactga |
20164919 |
T |
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| Q |
638 |
gtctaaca------cacgagtcaaaccaaaattttctgtagggacaaacttgtcattttgaaaagtatcaagggcaaatttggaaaatcatctccatgtt |
731 |
Q |
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| T |
20164918 |
gtctaacacacgatcacgagtcaaaccaaatttttctgtagggacaaacttgtcattttgaaaagtatcaagggtaaatttggaaaatcatctccatgtt |
20164819 |
T |
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| Q |
732 |
ttgtcctataaataccaaccaaaaccttcataccaca |
768 |
Q |
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| T |
20164818 |
ttgtcctataaataccaaccaaaaccttcataccaca |
20164782 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 11556958 - 11557002
Alignment:
| Q |
124 |
tggttacattcaaacacttcaatttactcaaattattacaggtgt |
168 |
Q |
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| T |
11556958 |
tggttacattcaatcacttaaattttctcaaattattacaggtgt |
11557002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 30303840 - 30303889
Alignment:
| Q |
128 |
tacattcaaacacttcaatttactcaaattattacaggtgtttatgtgtc |
177 |
Q |
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| T |
30303840 |
tacattcaatcatttccattttctcaaattattacaggtgtttatatgtc |
30303889 |
T |
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