View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12331_low_6 (Length: 596)

Name: NF12331_low_6
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12331_low_6
NF12331_low_6
[»] chr1 (10 HSPs)
chr1 (176-581)||(30689411-30689816)
chr1 (176-581)||(30698294-30698702)
chr1 (217-574)||(30656393-30656753)
chr1 (217-580)||(30671554-30671920)
chr1 (344-580)||(30718622-30718858)
chr1 (218-581)||(30710210-30710585)
chr1 (19-147)||(30698137-30698265)
chr1 (479-546)||(16252066-16252133)
chr1 (479-550)||(33042607-33042678)
chr1 (498-556)||(30623894-30623952)
[»] chr4 (3 HSPs)
chr4 (407-574)||(56539165-56539332)
chr4 (318-376)||(56539349-56539407)
chr4 (209-255)||(56539407-56539453)
[»] chr2 (3 HSPs)
chr2 (495-557)||(4420146-4420208)
chr2 (502-546)||(38337630-38337674)
chr2 (503-551)||(6507664-6507712)


Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 176 - 581
Target Start/End: Original strand, 30689411 - 30689816
Alignment:
Q  176 ttactgaaattaacaacttgatgatttgaacttgctgtttctgcttgaactttgattatcagatattgttagaagttgctcaagatattcaactcccaaa 275  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  30689411 ttactgaaattaacaacttgatgatttgaactagctgttgctgcttgtactttgattatcagatatggatagaagttgctcaagatattcaactcccaaa 30689510  T
Q  276 tcctctaacaccaaaacacttgatccttctgattcatcttgtttccctgctttattctttacaccttttgataacaactttctttgttcatagtgcctct 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30689511 tcctctaacaccaaaacacttgatccttctgattcatcttgtttccctgctttattctttacaccttttgataacatctttctttgttcatagtgcctct 30689610  T
Q  376 cttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacggcatt 475  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||     
T  30689611 cttttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcatc 30689710  T
Q  476 attacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgttgta 575  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||     
T  30689711 ataacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtg 30689810  T
Q  576 tctctg 581  Q
    ||||||    
T  30689811 tctctg 30689816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 176 - 581
Target Start/End: Original strand, 30698294 - 30698702
Alignment:
Q  176 ttactgaaattaacaacttgatgatttgaacttgctgtttctgcttgaactttgattatcagatattgttagaagttgctcaagatattcaactcccaaa 275  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30698294 ttactgaaattaacaacctgatgatttgaacttgctgttgctgcttgaactttgattatcagatattgttagaagttgctcgagatattcaactcccaaa 30698393  T
Q  276 tcctctaacaccaaaacacttgatccttctgattcatcttgtttccctgctttatt---ctttacaccttttgataacaactttctttgttcatagtgcc 372  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||||  | ||||||||||||  |||||||||||||||||||    
T  30698394 tcctctaacaccaaaacacttgatccctctgattcatcttgtttccctgctttattattctttgtagcttttgataacatttttctttgttcatagtgcc 30698493  T
Q  373 tctcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacggc 472  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||    
T  30698494 tttcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagc 30698593  T
Q  473 attattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgtt 572  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30698594 attattacctctcattgagaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgtt 30698693  T
Q  573 gtatctctg 581  Q
    |||||||||    
T  30698694 gtatctctg 30698702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 217 - 574
Target Start/End: Original strand, 30656393 - 30656753
Alignment:
Q  217 tgcttgaactttgattatcagatattgttagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgatccttctgattcatcttg 316  Q
    |||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30656393 tgcttgtagtttgattatcagatatggttagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgatccttctgattcatcttg 30656492  T
Q  317 tttccctgctttat---tctttacaccttttgataacaactttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagatccttttctgcaa 413  Q
    | ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30656493 tctccctgctttattattctttacaccttttgataacaactttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagatccttttctgcaa 30656592  T
Q  414 tcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacggcattattacctctcattgaaaatgcagcttgatcataagcta 513  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30656593 tcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcattattacctctcattgaaaatgcagcttgatcataagcta 30656692  T
Q  514 aagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgttgt 574  Q
    ||||||||||||||||||||||||||||||||| |||||| ||| | || || ||||||||    
T  30656693 aagcagcatcttcagcactatcaaatgttcctaaccaaacccttttgccaccccttgttgt 30656753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 217 - 580
Target Start/End: Original strand, 30671554 - 30671920
Alignment:
Q  217 tgcttgaactttgattatcagatattgttagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgatccttctgattcatcttg 316  Q
    |||||| |||||||| ||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  30671554 tgcttgtactttgatgatctgacatagttaaaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgatccctctgattgatcttg 30671653  T
Q  317 tttccctgctttatt---ctttacaccttttgataacaactttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagatccttttctgcaa 413  Q
    |||||||||||||||   ||||  | ||||||||||||  |||||||||||| |||| ||||| || |||||||||||||||||||| |||| |||||||    
T  30671654 tttccctgctttattattctttgtagcttttgataacatttttctttgttcacagtgtctctccttgagtgcaagtgcaggtgaagacccttctctgcaa 30671753  T
Q  414 tcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacggcattattacctctcattgaaaatgcagcttgatcataagcta 513  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30671754 tcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacggcattattacctctcattgaaaatgcagcttgatcataagcta 30671853  T
Q  514 aagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgttgtatctct 580  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||| | || || |||||||| |||||    
T  30671854 aagcagcatcttcagcactgtcaaatgttccaagccaaacccttttaccaccccttgttgtgtctct 30671920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 344 - 580
Target Start/End: Original strand, 30718622 - 30718858
Alignment:
Q  344 tgataacaactttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttg 443  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  30718622 tgataacatctttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatcgcttgcaaagattctttg 30718721  T
Q  444 accttttggacagaaaagttgagcacggcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttc 543  Q
    ||| |||| |||||||| |||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30718722 accctttgaacagaaaaattgagcacagcatcataacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttc 30718821  T
Q  544 ctagccaaactcttcttcctcctcttgttgtatctct 580  Q
    | |||||||| ||||||||||||||||||||||||||    
T  30718822 caagccaaacccttcttcctcctcttgttgtatctct 30718858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 218 - 581
Target Start/End: Original strand, 30710210 - 30710585
Alignment:
Q  218 gcttgaactttgattatcagatattgttagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgat---ccttctgattcatct 314  Q
    ||||| |||||||||||| || ||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||   || |||| |   |||    
T  30710210 gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgatgatccctctgctgattct 30710309  T
Q  315 tg---tttccctgctttattctttacaccttttga---taac---aactttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagatcctt 405  Q
    ||   |||||||||||||  ||||  || ||||||   | ||   || |||||||| |  ||||| |||||||| |||||||||||||||||||| ||||    
T  30710310 tgaaatttccctgctttaccctttttactttttgacgatgaccttaattttctttggttgtagtgtctctctttgagtgcaagtgcaggtgaagaccctt 30710409  T
Q  406 ttctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacggcattattacctctcattgaaaatgcagcttgatc 505  Q
    ||||||||||||||||||||||||||||||||||||||||  ||| || |||||| ||||| |  |||||||||||||||||||||||||||||||||||    
T  30710410 ttctgcaatcatattgaatctcttgcaaagattctttgacgctttcgaaagaaaaattgaggaaagcattattacctctcattgaaaatgcagcttgatc 30710509  T
Q  506 ataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgttgtatctctg 581  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30710510 ataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttcttcctcctcttgttgtatctctg 30710585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 30698137 - 30698265
Alignment:
Q  19 ttttgttcaatggatactactactagtactcactctttgagctcaaattacgaataaaattttgtttcatgtgaaaataaaaagaaagatcacaaaacct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30698137 ttttgttcaatggatactactactagtactcactctttgagctcaaattacgaataaaattttgtttcatgtgaaaataaaaagaaagatcgcaaaacct 30698236  T
Q  119 aaacacgctaagcagattaagcgatgatg 147  Q
    ||||||||||||| |||||||||||||||    
T  30698237 aaacacgctaagcggattaagcgatgatg 30698265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 479 - 546
Target Start/End: Original strand, 16252066 - 16252133
Alignment:
Q  479 acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccta 546  Q
    ||||||||||||||| |||||||||||||||||||  || ||  ||||||||||||||||||||||||    
T  16252066 acctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttccta 16252133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 479 - 550
Target Start/End: Complemental strand, 33042678 - 33042607
Alignment:
Q  479 acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagcca 550  Q
    ||||||||| ||||| || |||||||||||||| ||||||||| |||| ||||||||||| |||||||||||    
T  33042678 acctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagcca 33042607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 556
Target Start/End: Original strand, 30623894 - 30623952
Alignment:
Q  498 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactct 556  Q
    |||||||||||||||||||||||| |||||||  |||||||||| || | |||||||||    
T  30623894 gcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaactct 30623952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 6e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 407 - 574
Target Start/End: Complemental strand, 56539332 - 56539165
Alignment:
Q  407 tctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacggcattattacctctcattgaaaatgcagcttgatca 506  Q
    |||||||||||||||||||||||||||| || |||||||| |||| |||||||| ||||||||  ||||||||||||||| ||||||||||||||||||     
T  56539332 tctgcaatcatattgaatctcttgcaaatatcctttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgatcg 56539233  T
Q  507 taagctaaagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgttgt 574  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||  |||||||||    
T  56539232 taagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgt 56539165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 56539407 - 56539349
Alignment:
Q  318 ttccctgctttattctttacaccttttgataacaactttctttgttcatagtgcctctc 376  Q
    |||||||||||| | ||||||||||| ||||||| ||||||||||||| |||| |||||    
T  56539407 ttccctgctttactatttacacctttggataacatctttctttgttcacagtgtctctc 56539349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 56539453 - 56539407
Alignment:
Q  209 gctgtttctgcttgaactttgattatcagatattgttagaagttgct 255  Q
    |||||| |||| || ||||||||||||||||||| ||||||||||||    
T  56539453 gctgttgctgcatgtactttgattatcagatattattagaagttgct 56539407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 557
Target Start/End: Original strand, 4420146 - 4420208
Alignment:
Q  495 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactctt 557  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| || ||||||||||||    
T  4420146 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaactctt 4420208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 546
Target Start/End: Complemental strand, 38337674 - 38337630
Alignment:
Q  502 gatcataagctaaagcagcatcttcagcactatcaaatgttccta 546  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||    
T  38337674 gatcataggctaaagcagcatcttctgcagtatcaaatgttccta 38337630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 551
Target Start/End: Original strand, 6507664 - 6507712
Alignment:
Q  503 atcataagctaaagcagcatcttcagcactatcaaatgttcctagccaa 551  Q
    ||||||||| |||||||| |||| |||| ||||||||||||||| ||||    
T  6507664 atcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaa 6507712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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