View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12331_low_7 (Length: 578)
Name: NF12331_low_7
Description: NF12331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12331_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Complemental strand, 50972254 - 50971706
Alignment:
| Q |
18 |
atttgttgtagtgagagtgagaagaattgattcat-aaccttgcaattgctgtagtgtttggagaatgcacgtaatctgtttgatgagatgcatgtgagg |
116 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50972254 |
atttgttgtagtgagagtgagaagaattgattcatcaaccttgcaattgctgtagtgtttggagaatgcacgtaatctgtttgatgaaatgcatgtgagg |
50972155 |
T |
|
| Q |
117 |
aatttgtttacttgatctcctatgactggtgcttgttcagattctactctttctaggtagaaaatttgcctcatgctttaacatctatcatcatacttat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50972154 |
aatttgtttacttgatctcctatgactggtgcttgttcagattctactctttctaggtagaaaatttgcctcatgctttaacatctatcatcatacttat |
50972055 |
T |
|
| Q |
217 |
tgcctgcttcatgctttaacaatattattaacactgatgccttaacagaccctatatctttggtttttcatatgtgttctggcctctatttttgacactt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50972054 |
tgcctgcttcatgctttaacaatattattaacactgatgccttaacagaccctatatctttggtttttcat--gtgttctggcctctatttttgacactt |
50971957 |
T |
|
| Q |
317 |
ttatagtctaactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctatagaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50971956 |
ttatagtctaactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctatagaa |
50971857 |
T |
|
| Q |
417 |
aatggaagcagcaaggttgataaagaaaatactgtccaaaagaatgaaattctcttcaggattatatgctctttatccagtccaaaagaaaataccgtat |
516 |
Q |
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| T |
50971856 |
aatggaagcagcaaggttgataaagaaaatactgtccaaaagaatgaaattctcttcaggattatatgctctttatccagtccaaaagaaaataccgtat |
50971757 |
T |
|
| Q |
517 |
gttgaagttatacggtaaatctgttcatcattttatatgctctttatctct |
567 |
Q |
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| T |
50971756 |
gttgaagttatatggtaaatctgttcatcattttatatgctctttatctct |
50971706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 305 - 477
Target Start/End: Original strand, 9008773 - 9008945
Alignment:
| Q |
305 |
tttttgacacttttatagtctaactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgtt |
404 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||| |
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| T |
9008773 |
tttttaacacttttatagtctaactcaatataattgcttagatttcatgcaggacacacttcacaaccacattggcatcaatgggtatatagatgatgtt |
9008872 |
T |
|
| Q |
405 |
gaagctatagaaaatggaagcagcaaggttgataaagaaaatactgtccaaaagaatgaaattctcttcagga |
477 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9008873 |
gaagctatagaaaatggaagcaacaaggttgataaagaaaatacagtccaaaagaatgaaattctcttcagga |
9008945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 325 - 465
Target Start/End: Complemental strand, 16519630 - 16519490
Alignment:
| Q |
325 |
taactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctatagaaaatggaag |
424 |
Q |
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|||||||||||||||| ||||| ||||||||||| ||||||||||| | || ||| |||| |||||| |||||||||| ||||||||||||||||||||| |
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| T |
16519630 |
taactcaatataattgtttaaacttcatgcaggaaacacttcacaagcacaatggtagcagtgagtccatagatgatgctgaagctatagaaaatggaag |
16519531 |
T |
|
| Q |
425 |
cagcaaggttgataaagaaaatactgtccaaaagaatgaaa |
465 |
Q |
| |
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|| |||||||| |||||||| | || ||||||||||||| |
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| T |
16519530 |
caaaaaggttgacaaagaaaagatagttcaaaagaatgaaa |
16519490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 346
Target Start/End: Complemental strand, 500221 - 500145
Alignment:
| Q |
270 |
atatctttggtttttcatatgtgttctggcctctatttttgacacttttatagtctaactcaatataattgcttaaa |
346 |
Q |
| |
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|||||||| ||||||||||||| || |||| |||||||| ||||||||||| |||||||||||||||||| ||||| |
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| T |
500221 |
atatctttcgtttttcatatgttttatggcttctattttctacacttttatattctaactcaatataattgtttaaa |
500145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 349 - 431
Target Start/End: Complemental strand, 36870961 - 36870879
Alignment:
| Q |
349 |
tcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctatagaaaatggaagcagcaag |
431 |
Q |
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|
||||||| || ||||||||||||| |||||| |||||||||||||||||||| |||||||| | | | |||||||||| |||| |
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| T |
36870961 |
tcatgcaagaaacacttcacaaccacattggtagcaatgagtctatagatgacgttgaagccacaaacaatggaagcaacaag |
36870879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 4133355 - 4133408
Alignment:
| Q |
71 |
gtgtttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtt |
124 |
Q |
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|||||| ||||||||| |||| |||||||||| |||||||| ||||||||||| |
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| T |
4133355 |
gtgtttcgagaatgcatgtaacgtgtttgatgaaatgcatgtcaggaatttgtt |
4133408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 8423708 - 8423761
Alignment:
| Q |
71 |
gtgtttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtt |
124 |
Q |
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|||||| ||||||||| |||| |||||||||| |||||||||||||||||||| |
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| T |
8423708 |
gtgtttcgagaatgcatgtaaagtgtttgatgaaatgcatgtgaggaatttgtt |
8423761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 36085884 - 36085803
Alignment:
| Q |
74 |
tttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtttacttgatctcctatgactggtgcttgttca |
155 |
Q |
| |
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||||||||| |||| ||| |||||||||| ||| ||||| ||||||||||||||| ||| |||||| |||| |||||||| |
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| T |
36085884 |
tttggagaaggcacataaagtgtttgatgaaatgattgtgatgaatttgtttacttggtctgctatgattggttcttgttca |
36085803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 30193802 - 30193846
Alignment:
| Q |
110 |
tgtgaggaatttgtttacttgatctcctatgactggtgcttgttc |
154 |
Q |
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||||||||||||||||||||| ||| |||||| ||||| |||||| |
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| T |
30193802 |
tgtgaggaatttgtttacttggtctgctatgattggtggttgttc |
30193846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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