View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12332_low_2 (Length: 254)
Name: NF12332_low_2
Description: NF12332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12332_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 72 - 240
Target Start/End: Complemental strand, 39739663 - 39739495
Alignment:
| Q |
72 |
aatgtctccgtaacctatttcttagatttggtttaacttctttctttgattttggataacaactatgggagcatttctggtttctaggttatgaaagtga |
171 |
Q |
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| T |
39739663 |
aatgtctccgtaacctatttcttagatttggtttaacttctttctttgattttggataacaactatgggagcatttctggtttctaggttatgaaagtga |
39739564 |
T |
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| Q |
172 |
tggcagctctcagagacttacaattcgggaacagcttgcacagttggttggagaaagggatgatgattt |
240 |
Q |
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| T |
39739563 |
tggcagctctcagagacttacaattcgggaacagcttgcacagttggttggagaaagggatgatgattt |
39739495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 5667308 - 5667414
Alignment:
| Q |
135 |
tatgggagcatttctggtttctaggttatgaaagtgatggcagctctcagagacttacaattcgggaacagcttgcacagttggttggagaaagggatga |
234 |
Q |
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| T |
5667308 |
tatgggagcatttctggtttctaggttatgaaagtgatggcagctctcagcgacttagaattcgggaacagcttgaacagttggttggagaaagggatga |
5667407 |
T |
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| Q |
235 |
tgatttt |
241 |
Q |
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||||||| |
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| T |
5667408 |
tgatttt |
5667414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 39739703 - 39739662
Alignment:
| Q |
10 |
gcacagactgatatgcatgtatgtctcaaagattcatctgaa |
51 |
Q |
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| T |
39739703 |
gcacagactgatatgcatgtatgtctcaaagatttatctgaa |
39739662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 13325435 - 13325541
Alignment:
| Q |
135 |
tatgggagcatttctggtttctaggttatgaaagtgatggcagctctcagagacttacaattcgggaacagcttgcacagttggttggagaaagggatga |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13325435 |
tatgggagcatttctggtttctaggttatgaaagtgatggcagctctcagcgacttagaattcgggaacagcttgaacagttggttggagaaagggatga |
13325534 |
T |
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| Q |
235 |
tgatttt |
241 |
Q |
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||||||| |
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| T |
13325535 |
tgatttt |
13325541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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