View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12332_low_3 (Length: 212)
Name: NF12332_low_3
Description: NF12332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12332_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 10382468 - 10382659
Alignment:
| Q |
2 |
cacataagcacacattggacacgagtgagaccaacacataagcatgtaatagtttaacaaattaaattaaatgtaatcaccagcagatgggtctcttgat |
101 |
Q |
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| T |
10382468 |
cacaaaagcacacattggacacgagtgagaccaacacataagcatgtaatagtttaacaaattaaattaaatgtaatcaccaccatatgggtctcttcat |
10382567 |
T |
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| Q |
102 |
tttttaatcaagaagtataagatcaatttttacaacttatggaatttttacaggttgtttgatgttgctgtggtggggaggaaggagagaga |
193 |
Q |
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| T |
10382568 |
tttttaatcaagaagtataatatcaatttttacagcttatggaatttttaaaggttgtttgatgttgctgtggtggggaggaaggagagaga |
10382659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 9484583 - 9484403
Alignment:
| Q |
11 |
acacattggacacgagtgagaccaacacataagcatgtaatagtttaacaaattaaattaaatgtaatcaccagcagatgggtctcttgattttttaatc |
110 |
Q |
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| T |
9484583 |
acacattggacatgagtgagaccatca--taagcatgtaatagtttaacaaattaaattaaatgtaatcaccaccagatgggtctcttgattttttaatc |
9484486 |
T |
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| Q |
111 |
aagaagtataagatcaatttttacaacttatggaatttttacaggttgtttgatgttgctgtggtggggaggaaggagagaga |
193 |
Q |
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| T |
9484485 |
aagaagtataagatcaatttttacagcttatagaatttttacatgttgtttgatgttgctgtggtggggaggaaggagagaga |
9484403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 52721048 - 52721218
Alignment:
| Q |
2 |
cacataagcacacattggacacgagtgagaccaacacataagcatgtaatagtttaacaaattaaattaaatgtaatcaccagcagatgggtctcttgat |
101 |
Q |
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| T |
52721048 |
cacagaagcacacattggacacgagtgagaccaacacataagcatgtaatagtttaacaaattaaat---------------------gggtctcttgat |
52721126 |
T |
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| Q |
102 |
tttttaatcaagaagtataagatcaatttttacaacttatggaatttttacaggttgtttgatgttgctgtggtggggaggaaggagagaga |
193 |
Q |
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| T |
52721127 |
tttttaatcaagaagtataagatcaatttttacagcttatggaatttttacgggttgtttgatgttgctgtggtggggaggaaggagagaga |
52721218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 46993765 - 46993711
Alignment:
| Q |
87 |
gatgggtctcttgattttttaatcaagaagtataagatcaatttttacaacttat |
141 |
Q |
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| T |
46993765 |
gatgggtcacttgattttttaatcaagaaggataagatcaatttttacagcttat |
46993711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 3136101 - 3136060
Alignment:
| Q |
153 |
aggttgtttgatgttgctg-tggtggggaggaaggagagaga |
193 |
Q |
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| T |
3136101 |
aggttgtttgatgttggtggtggtggggaggaaggagagaga |
3136060 |
T |
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