View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12333_high_1 (Length: 430)
Name: NF12333_high_1
Description: NF12333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12333_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 43602156 - 43601739
Alignment:
| Q |
1 |
tagctaaaggtaaaggcaatcaa-taacttcagcagaagaagactaatttctctttaattaatcagtaagaatcaaagcatccaaagccaatacatgtgt |
99 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43602156 |
tagctaaaggtaaaggcaatcaactaacttcagcagaagaagactaatttctctttaattaatcagtaagaatcaaagcatccaaagccaatacatgt-t |
43602058 |
T |
|
| Q |
100 |
caccaaatttttctaccctggttaagttaagtggataacaattctataaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602057 |
caccaaatttttctaccctggttaagttaagtggataacgattctataaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaa |
43601958 |
T |
|
| Q |
200 |
gtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaaataattttcataatttgaagatatcatatcaattggagacata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43601957 |
gtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaaataattttcataatttgaagatatcatatcaattggagacata |
43601858 |
T |
|
| Q |
300 |
attctcagttccctttcagttgtactcagtctagcatatgcccagatttatatcagcatttgccaattgccattgcaacttcgcacaaagcatcattaaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43601857 |
attctcagttccctttcagttgtactcagtctagcatatgcccagatttatagcagcatttgccaattgccaatgcaacttcgcacaaagcatcattaaa |
43601758 |
T |
|
| Q |
400 |
attataataaccacaggtt |
418 |
Q |
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||||||||||||||||||| |
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| T |
43601757 |
attataataaccacaggtt |
43601739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 163 - 283
Target Start/End: Original strand, 22436220 - 22436340
Alignment:
| Q |
163 |
cacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaaataatt |
262 |
Q |
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||||||||||| ||||||||| ||||||||||||||| |||||| ||| | |||| ||||||||||||||||||| | ||||||||||||||||| ||| |
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| T |
22436220 |
cacgtgatgcatgtgacagaccgcaaattattgtcaattggaaccgttataagaggcaactttatcatgtgcgggagtatgttttggtgcagaaatcatt |
22436319 |
T |
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| Q |
263 |
ttcataatttgaagatatcat |
283 |
Q |
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|||||||||| |||||||||| |
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| T |
22436320 |
ttcataattttaagatatcat |
22436340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 22239084 - 22239135
Alignment:
| Q |
232 |
tgcggggctgtgttttggtgcagaaataattttcataatttgaagatatcat |
283 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22239084 |
tgcgggactgtgttttggtgcagaaataattttcataattttaagatatcat |
22239135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 37560602 - 37560653
Alignment:
| Q |
232 |
tgcggggctgtgttttggtgcagaaataattttcataatttgaagatatcat |
283 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
37560602 |
tgcgggactgtgttttggtgcagaaataattttcataattttaagatatcat |
37560653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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