View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12333_low_1 (Length: 1196)

Name: NF12333_low_1
Description: NF12333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12333_low_1
NF12333_low_1
[»] chr4 (4 HSPs)
chr4 (12-738)||(48430434-48431155)
chr4 (894-1177)||(48431263-48431546)
chr4 (777-844)||(48431199-48431266)
chr4 (438-501)||(38648631-38648694)
[»] chr3 (5 HSPs)
chr3 (917-1065)||(1925459-1925606)
chr3 (452-600)||(53287786-53287930)
chr3 (518-599)||(52545659-52545740)
chr3 (197-394)||(52805622-52805821)
chr3 (452-501)||(52805590-52805639)
[»] chr1 (8 HSPs)
chr1 (300-561)||(23627338-23627589)
chr1 (437-497)||(23617689-23617749)
chr1 (437-497)||(23649030-23649090)
chr1 (437-497)||(23734660-23734720)
chr1 (437-497)||(23741852-23741912)
chr1 (464-501)||(23617991-23618028)
chr1 (464-501)||(23649333-23649370)
chr1 (464-501)||(23734960-23734997)
[»] chr6 (11 HSPs)
chr6 (452-600)||(11841883-11842027)
chr6 (462-552)||(34114493-34114579)
chr6 (462-500)||(34135862-34135900)
chr6 (462-500)||(34138860-34138898)
chr6 (452-494)||(34168325-34168367)
chr6 (466-498)||(34091888-34091920)
chr6 (452-498)||(34106729-34106775)
chr6 (224-258)||(34114494-34114528)
chr6 (462-500)||(34130235-34130272)
chr6 (225-258)||(34148677-34148710)
chr6 (225-258)||(34161293-34161326)
[»] scaffold0620 (1 HSPs)
scaffold0620 (466-498)||(7222-7254)
[»] chr2 (4 HSPs)
chr2 (452-495)||(8144014-8144057)
chr2 (452-495)||(8150292-8150335)
chr2 (452-495)||(8154916-8154959)
chr2 (452-495)||(8176674-8176717)


Alignment Details
Target: chr4 (Bit Score: 633; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 12 - 738
Target Start/End: Original strand, 48430434 - 48431155
Alignment:
Q  12 cctgtgtaaaatgcattggcaaacgaccccatcagttgactattctgacaccctttatgtaactcagcctccaactgtttgcatctctccaaataattca 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48430434 cctgtgtaaaatgcattggtaaacgaccccatcagttgactattctgacacccttcatgtaactcagcctccaactgtttgcatctctccaaataattca 48430533  T
Q  112 tcctcaagttcccttgcactagccaaaattgcctttcccctggccacctgttgatgttgaagaattcaaatatgcacagagaaaattgaatcaaaagcat 211  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48430534 gcctcaagttcccttgcactagccaaaattgcctttcccctggccacctgttgatgttgaagaattcaaatatgcacagagaaaattgaatcaaaagcat 48430633  T
Q  212 tgataaagctccataaactttgttaagatttccagaaaaacttgcctactcttcttcatcaatttggaaacgcctacaacccaggttacaaagactatga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||| ||||||||||||||||||||||||||    
T  48430634 tgataaagctccataaactttgttaagatttccagaaaaacttgcctgctcttct---tcaatttggaaacgcgtacaacccaggttacaaagactatga 48430730  T
Q  312 tatagaaagagaactagaacaaattcctttgtgaatcgaacatgaggtttctcctccttaactctagccaggatagtcagcaatgctttactcccagtcc 411  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||    
T  48430731 tatagaaagagaactagaacgaattcctttgtgaatcgaacatgaggtttctcctccttaactctagccaggatagtcagcaatgctttac------tcc 48430824  T
Q  412 cagccacctgctggtttaaaaaatcgatatcaaagaataaaaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagcattgccaaatgccct 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48430825 cagccacctgctggtttaaaaaatcgatatcaaagaataaaaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagcattgccaaatgccct 48430924  T
Q  512 atcccgtaaactttgttaacatttgctgaaaaa----cttgcctcggtttcttgatcacgtgggttgttagtcaaagttgaagatttagccctcaaatgg 607  Q
    |||||||||||||||||||||||||||||||||    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48430925 atcccgtaaactttgttaacatttgctgaaaaacttgcttgcctcggtttcttgatcatgtgggttgttagtcaaagttgaagatttagccctcaaatgg 48431024  T
Q  608 ccagatttagaagttgaatgaccggaaaaagccctctcatagccgtaccaataataaggaagaggcttctggggcacacctctaaagagaaggtcaacta 707  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48431025 ccagacttagcagttgaatgaccggaaaaagccctctcatagccgtaccaataataaggaagaggcttcgggggcacacctctaaagagaaggtcaacta 48431124  T
Q  708 gatggagtttaagtatgaccagagaaagctc 738  Q
    ||||||||||||||||||||| |||||||||    
T  48431125 gatggagtttaagtatgaccaaagaaagctc 48431155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 894 - 1177
Target Start/End: Original strand, 48431263 - 48431546
Alignment:
Q  894 aaatttaatactcaaattcatgcccacacattccttcttgtcataacctgatgcatgatgaaaagttgtgttcttgttcttatccaaagaatccactttt 993  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48431263 aaatttgatactcaaattcatgcccacacattccttcttgtcataacctgatgcatgatgaaaagttgtgttcttgtacttatccaaagaatccactttt 48431362  T
Q  994 gctccagactcaaggagaaattgtgtatacttaacctggaataacatcacgagcaacttttaatccatacattacaagaacaaaactagattcataaaat 1093  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48431363 gctccagactcaaggagaaattgtgtatacttaacctggaataacatcacgagcaacttttaatccatacattacaagaacaaaactagattcataaaat 48431462  T
Q  1094 tataactctttgagctttatttctcttcttgcgtgccctgcctagcttgaaggaagagagggctggatggagctagaacgttca 1177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48431463 tataactctttgagctttatttctcttcttgcgtgccctgcctagcttgaaggaagagagggctggatggagctagaacgttca 48431546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 777 - 844
Target Start/End: Original strand, 48431199 - 48431266
Alignment:
Q  777 gggaatgaaagcacaaatcagtgtaggactacatgacattaatatactaaaataacaatgaatgaaat 844  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48431199 gggaatgaaagcacaaatcagtgtaggacgacatgacattaatatactaaaataacaatgaatgaaat 48431266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 438 - 501
Target Start/End: Original strand, 38648631 - 38648694
Alignment:
Q  438 atatcaaagaataaaaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagcattgc 501  Q
    |||| |||||||  ||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  38648631 atattaaagaattcaaatatgaacaaagaaactaaaattgtgaaacttgaatcaaaagcattgc 38648694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 917 - 1065
Target Start/End: Complemental strand, 1925606 - 1925459
Alignment:
Q  917 ccacacattccttcttgtcataacctgatgcatgatgaaaagttgtgttcttgttcttatccaaagaatccacttttgctccagactcaaggagaaattg 1016  Q
    |||||||||| ||| || ||||||||| ||||| ||||| || ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||  |||    
T  1925606 ccacacattctttcctgccataacctgctgcataatgaagagctgtgttcttgttcttatccaaagcatctacttttgctccagcctcaaggagagcttg 1925507  T
Q  1017 tgtatacttaacctggaataacatcacgagcaacttttaatccatacat 1065  Q
     | | |||| ||||||||| | |||| |||||  |||||||||||||||    
T  1925506 cgcacacttcacctggaat-atatcaggagcatattttaatccatacat 1925459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 452 - 600
Target Start/End: Complemental strand, 53287930 - 53287786
Alignment:
Q  452 aaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagcattgccaaatgccctatcccgtaaactttgttaacatttgctg-aaaaacttgcc 550  Q
    ||||||||| |||||||| | |||||||||||| |||||||||||||||| ||  ||     ||| ||||||||| |||||||||| | |||||||||||    
T  53287930 aaatatgcacaaagaaacgagaattgtgaaactagaatcaaaagcattgctaacggc-----cccataaactttggtaacatttgcagaaaaaacttgcc 53287836  T
Q  551 tcggtttcttgatcacgtgggttgttagtcaaagttgaagatttagccct 600  Q
    | ||||||||||||| || ||||||  ||  ||| |||||||||| ||||    
T  53287835 tgggtttcttgatcaggtaggttgtgggtagaagctgaagatttaaccct 53287786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 518 - 599
Target Start/End: Complemental strand, 52545740 - 52545659
Alignment:
Q  518 taaactttgttaacatttgctgaaaaacttgcctcggtttcttgatcacgtgggttgttagtcaaagttgaagatttagccc 599  Q
    |||||||||||||||| |||  |||||||||| | |||||||| ||||||| |||||  |||  | ||||||||||||||||    
T  52545740 taaactttgttaacatatgcaaaaaaacttgcttgggtttcttaatcacgtaggttgacagtttacgttgaagatttagccc 52545659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 394
Target Start/End: Original strand, 52805622 - 52805821
Alignment:
Q  197 ttgaatcaaaagcattgataaa-gctccataaactttgttaagatttccagaa-aaacttgcctactcttcttcatcaatttggaaacgcctac-aaccc 293  Q
    ||||||||||||||||| |||| ||| |||| ||||||||||||||| ||||| |||||||||   ||||||| ||||| ||    | |  ||| || ||    
T  52805622 ttgaatcaaaagcattgctaaaggctacatagactttgttaagatttgcagaagaaacttgccgtgtcttcttgatcaaattcttcatgagtacaaaacc 52805721  T
Q  294 aggttacaaagactatgatatagaaagagaactagaacaaattcctttgtgaatcgaacatgaggtttctcctccttaactctagccaggatagtcagca 393  Q
    ||| | |||||||||||||| ||||||||||||||||  ||||| | ||  ||||||||   |||  |||||||| |||||||||  |||||||| ||||    
T  52805722 agg-tgcaaagactatgatacagaaagagaactagaaggaattcttgtgcaaatcgaacggaaggagtctcctccataactctagttaggatagtaagca 52805820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 452 - 501
Target Start/End: Original strand, 52805590 - 52805639
Alignment:
Q  452 aaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagcattgc 501  Q
    ||||||||||  ||||||| | ||||| ||||||||||||||||||||||    
T  52805590 aaatatgcatcgagaaacttatattgtaaaacttgaatcaaaagcattgc 52805639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 300 - 561
Target Start/End: Complemental strand, 23627589 - 23627338
Alignment:
Q  300 caaagactatgatatagaaagagaactagaacaaattcctttgtgaatcgaacatgaggtttctcctccttaactctagccaggatagtcagcaatgctt 399  Q
    |||||||||||||| | ||||||||||||||  || |||| ||||||| ||||   |||  |||||||| ||||||||| ||||||||| |||||  | |    
T  23627589 caaagactatgatacataaagagaactagaatgaactcctgtgtgaatggaactgaaggagtctcctccataactctagtcaggatagtaagcaacccct 23627490  T
Q  400 tactcccagtcccagccacctgctggtttaaaaaatcgatatcaaagaataaaaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagcatt 499  Q
      ||||||| ||| |    ||||||  || | |||| |||||| |||| | |||||||||| |||||||| | ||||||||  |||||||||||||||||    
T  23627489 ctctcccagcccccg----ctgctg--tttagaaattgatatcgaagatttaaaatatgcagaaagaaacaataattgtgatgcttgaatcaaaagcatt 23627396  T
Q  500 gccaaatgccctatcccgtaaactttgttaacatttgctg-aaaaacttgcctcggtttcttg 561  Q
    || ||| |     |||| ||||||||| |||||||||| | |||||||||||| |||||||||    
T  23627395 gctaaagg-----tcccataaactttggtaacatttgcagaaaaaacttgcctgggtttcttg 23627338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 437 - 497
Target Start/End: Original strand, 23617689 - 23617749
Alignment:
Q  437 gatatcaaagaataaaaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagca 497  Q
    ||||| |||||||  ||||||||||| |||||||||||||| |||||||||||||||||||    
T  23617689 gatattaaagaattcaaatatgcatatagaaactaaaattgagaaacttgaatcaaaagca 23617749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 437 - 497
Target Start/End: Original strand, 23649030 - 23649090
Alignment:
Q  437 gatatcaaagaataaaaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagca 497  Q
    ||||| |||||||  ||||||||||| |||||||||||||| |||||||||||||||||||    
T  23649030 gatattaaagaattcaaatatgcatatagaaactaaaattgagaaacttgaatcaaaagca 23649090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 437 - 497
Target Start/End: Original strand, 23734660 - 23734720
Alignment:
Q  437 gatatcaaagaataaaaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagca 497  Q
    ||||| |||||||  ||||||||||  |||||||||||||| ||||||| |||||||||||    
T  23734660 gatattaaagaattcaaatatgcatttagaaactaaaattgagaaacttaaatcaaaagca 23734720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 437 - 497
Target Start/End: Original strand, 23741852 - 23741912
Alignment:
Q  437 gatatcaaagaataaaaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagca 497  Q
    ||||| |||||||  ||||||||||  |||||||||||||| ||||||| |||||||||||    
T  23741852 gatattaaagaattcaaatatgcatttagaaactaaaattgagaaacttaaatcaaaagca 23741912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 464 - 501
Target Start/End: Original strand, 23617991 - 23618028
Alignment:
Q  464 agaaactaaaattgtgaaacttgaatcaaaagcattgc 501  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  23617991 agaaactataattgcgaaacttgaatcaaaagcattgc 23618028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 464 - 501
Target Start/End: Original strand, 23649333 - 23649370
Alignment:
Q  464 agaaactaaaattgtgaaacttgaatcaaaagcattgc 501  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  23649333 agaaactataattgagaaacttgaatcaaaagcattgc 23649370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 464 - 501
Target Start/End: Original strand, 23734960 - 23734997
Alignment:
Q  464 agaaactaaaattgtgaaacttgaatcaaaagcattgc 501  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  23734960 agaaactataattgcgaaacttgaatcaaaagcattgc 23734997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 452 - 600
Target Start/End: Original strand, 11841883 - 11842027
Alignment:
Q  452 aaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagcattgccaaatgccctatcccgtaaactttgttaacatttgctg-aaaaacttgcc 550  Q
    ||||||||| |||||||| | |||||||||||| |||||||||||||||| ||  ||     ||| ||||| ||| |||||||||| | |||||||||||    
T  11841883 aaatatgcacaaagaaacgagaattgtgaaactagaatcaaaagcattgctaacggc-----cccataaacattggtaacatttgcagaaaaaacttgcc 11841977  T
Q  551 tcggtttcttgatcacgtgggttgttagtcaaagttgaagatttagccct 600  Q
    | ||||||||||||| || ||||||  ||  ||| |||||||||| ||||    
T  11841978 tgggtttcttgatcaggtaggttgtgggtagaagctgaagatttaaccct 11842027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 462 - 552
Target Start/End: Complemental strand, 34114579 - 34114493
Alignment:
Q  462 aaagaaactaaaattgtgaaacttgaatcaaaagcattgccaaa-tgccctatcccgtaaactttgttaacatttgctgaaaaacttgcctc 552  Q
    ||||||||||||||||||||||||||| ||||| |||| | ||| |||||||     |||||||||||||||||| | ||||||||||||||    
T  34114579 aaagaaactaaaattgtgaaacttgaaacaaaaacattactaaagtgcccta-----taaactttgttaacatttccagaaaaacttgcctc 34114493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 462 - 500
Target Start/End: Original strand, 34135862 - 34135900
Alignment:
Q  462 aaagaaactaaaattgtgaaacttgaatcaaaagcattg 500  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34135862 aaagaaactaaaattgtgaaacttgaatcaaaagcattg 34135900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 462 - 500
Target Start/End: Original strand, 34138860 - 34138898
Alignment:
Q  462 aaagaaactaaaattgtgaaacttgaatcaaaagcattg 500  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  34138860 aaagaaactaaaactgtgaaacttgaatcaaaagcattg 34138898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 452 - 494
Target Start/End: Complemental strand, 34168367 - 34168325
Alignment:
Q  452 aaatatgcataaagaaactaaaattgtgaaacttgaatcaaaa 494  Q
    ||||||| | |||||||||||||||||||||||||||||||||    
T  34168367 aaatatgaacaaagaaactaaaattgtgaaacttgaatcaaaa 34168325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 466 - 498
Target Start/End: Complemental strand, 34091920 - 34091888
Alignment:
Q  466 aaactaaaattgtgaaacttgaatcaaaagcat 498  Q
    |||||||||||||||||||||||||||||||||    
T  34091920 aaactaaaattgtgaaacttgaatcaaaagcat 34091888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 34106775 - 34106729
Alignment:
Q  452 aaatatgcataaagaaactaaaattgtgaaacttgaatcaaaagcat 498  Q
    ||||||| | || |||||||||||| |||||||||||||||||||||    
T  34106775 aaatatgaacaaggaaactaaaattctgaaacttgaatcaaaagcat 34106729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 34114528 - 34114494
Alignment:
Q  224 ataaactttgttaagatttccagaaaaacttgcct 258  Q
    |||||||||||||| ||||||||||||||||||||    
T  34114528 ataaactttgttaacatttccagaaaaacttgcct 34114494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 462 - 500
Target Start/End: Original strand, 34130235 - 34130272
Alignment:
Q  462 aaagaaactaaaattgtgaaacttgaatcaaaagcattg 500  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  34130235 aaagaaactaaa-ttgtgaaacttgaatcaaaagcattg 34130272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 34148710 - 34148677
Alignment:
Q  225 taaactttgttaagatttccagaaaaacttgcct 258  Q
    ||||||||||||| ||||||||||||||||||||    
T  34148710 taaactttgttaacatttccagaaaaacttgcct 34148677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 258
Target Start/End: Complemental strand, 34161326 - 34161293
Alignment:
Q  225 taaactttgttaagatttccagaaaaacttgcct 258  Q
    ||||||||||||| ||||||||||||||||||||    
T  34161326 taaactttgttaacatttccagaaaaacttgcct 34161293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 466 - 498
Target Start/End: Complemental strand, 7254 - 7222
Alignment:
Q  466 aaactaaaattgtgaaacttgaatcaaaagcat 498  Q
    |||||||||||||||||||||||||||||||||    
T  7254 aaactaaaattgtgaaacttgaatcaaaagcat 7222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 452 - 495
Target Start/End: Complemental strand, 8144057 - 8144014
Alignment:
Q  452 aaatatgcataaagaaactaaaattgtgaaacttgaatcaaaag 495  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  8144057 aaatatgtagaaagaaactaaaattgtgaaatttgaatcaaaag 8144014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 452 - 495
Target Start/End: Complemental strand, 8150335 - 8150292
Alignment:
Q  452 aaatatgcataaagaaactaaaattgtgaaacttgaatcaaaag 495  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  8150335 aaatatgtaaaaagaaactaaaattgtgaaatttgaatcaaaag 8150292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 452 - 495
Target Start/End: Complemental strand, 8154959 - 8154916
Alignment:
Q  452 aaatatgcataaagaaactaaaattgtgaaacttgaatcaaaag 495  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  8154959 aaatatgtaaaaagaaactaaaattgtgaaatttgaatcaaaag 8154916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 452 - 495
Target Start/End: Complemental strand, 8176717 - 8176674
Alignment:
Q  452 aaatatgcataaagaaactaaaattgtgaaacttgaatcaaaag 495  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  8176717 aaatatgtagaaagaaactaaaattgtgaaatttgaatcaaaag 8176674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University