View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12333_low_3 (Length: 342)
Name: NF12333_low_3
Description: NF12333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12333_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 11683443 - 11683759
Alignment:
| Q |
17 |
agaaagtaggtggttattattgtgaagtgttactgcgtttcacatatttattctgtgagcatatat--------atattgcttgcgtgagtccnnnnnnn |
108 |
Q |
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| T |
11683443 |
agaaagtaggtggttattattataaagtgttactgcatttcacatatttattctgtgagcatatattaaattacatgttgcttgcatgagtccttttttt |
11683542 |
T |
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| Q |
109 |
nnattgaaaaggtgtaaaattttggataaaattgttgtgagttctttaataataaaaacagcaaagaatgtcaaaacgaatacgaggatcacattaaaca |
208 |
Q |
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| T |
11683543 |
ttattgaaaaggtgtaaaattttcgataaaattgttgtgagttctt-attaataaaaacagcaaagaatgtcaaaacaaatacgaaaatcacattaaaca |
11683641 |
T |
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| Q |
209 |
agttgctaaaaccatacgaaaagtacaagaaaaaactcctatggatgtaaatctcaaaggaatacctcaatctcaacatcatgatccaatacagtcggtt |
308 |
Q |
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| T |
11683642 |
agttgctaaaaccatacgaaaagtacaagaaaaaactcctatggatgtaaatctcaaaggaatacctcaatctcaacatcatgatccaatacagtcggtt |
11683741 |
T |
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| Q |
309 |
gggcagaatcatactcca |
326 |
Q |
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| T |
11683742 |
gggcagaatcatactcca |
11683759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 141 - 326
Target Start/End: Complemental strand, 11630682 - 11630497
Alignment:
| Q |
141 |
tgttgtgagttctttaataataaaaacagcaaagaatgtcaaaacgaatacgaggatcacattaaacaagttgctaaaaccatacgaaaagtacaagaaa |
240 |
Q |
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| T |
11630682 |
tgttgtgagtgatatattaataaaaacagcaaagaatgtcaaaacaacta-gag-atcacattacacaagttgctaaaaccatacataatatacaagaaa |
11630585 |
T |
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| Q |
241 |
aaactcctatggatgtaaatctcaaagga--atacctcaatctcaacatcatgatccaatacagtcggttgggcagaatcatactcca |
326 |
Q |
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| T |
11630584 |
aattgcctacggatgtaaagctaaaaggacaatacctcaatctccacatcatgatccaatacaataggtttcgcagaatcatactcca |
11630497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 11638926 - 11638869
Alignment:
| Q |
269 |
aatacctcaatctcaacatcatgatccaatacagtcggttgggcagaatcatactcca |
326 |
Q |
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| T |
11638926 |
aatacctcaatctcaacatcatgatccaatacaataggttgggcagaatcatactcca |
11638869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 11675927 - 11676027
Alignment:
| Q |
229 |
aagtacaagaaaaaact-cctatggatgtaaatctcaaagga--atacctcaatctcaacatcatgatccaatacagtcggttgggcagaatcatactcc |
325 |
Q |
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| T |
11675927 |
aagtacaagaaaaaatttcctatgaatgtaaatctcaaagaacaatacctcaatctccacatcatgattcaatagagtcgattgggcagaattatactcc |
11676026 |
T |
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| Q |
326 |
a |
326 |
Q |
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| T |
11676027 |
a |
11676027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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