View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12333_low_4 (Length: 307)
Name: NF12333_low_4
Description: NF12333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12333_low_4 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 31095615 - 31095342
Alignment:
| Q |
18 |
attacaaagggaaataggctataaataaagaatgctaccgagggaattaacattaaatgcaagtcatgttgcacctgataatgtggatcaagttgtgtac |
117 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
31095615 |
attacaaagggaaataggctgtaaataaagaaagctaccgagggaattaacattaaatgcaagtcatgctgcacctgataatgtgaatcaagttgtgtac |
31095516 |
T |
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| Q |
118 |
catctgcacattgtgtctttaaagaagataaattaacattagcagcaatagcctgatgcatttgttgcagcaatagagattgctagtttgaaaaggccat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
31095515 |
catctgcacattgtgtctttaaagaagataaattaacatcagcagcaatggcctgatgcatttgttgcagcaatagagattgttagtttgaaaaagccat |
31095416 |
T |
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| Q |
218 |
catgaatgagagggatacataatcagatgctatattgtcgctgtcgggtttatattcaatcacaaaatcaaagc |
291 |
Q |
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|||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31095415 |
catgaatgagcgggatacagaatcggatgctatattgtctctgtcgggtttatattcaatcacaaaatcaaagc |
31095342 |
T |
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Target: scaffold0202 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 4340 - 4067
Alignment:
| Q |
18 |
attacaaagggaaataggctataaataaagaatgctaccgagggaattaacattaaatgcaagtcatgttgcacctgataatgtggatcaagttgtgtac |
117 |
Q |
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|||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| | || ||||||||| |||||||||||||||||| |
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| T |
4340 |
attacaaagggacataggctgtaaataaagaaagctactgagggaattaacattaaatgcaagtcacgctgaacctgataacgtggatcaagttgtgtac |
4241 |
T |
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| Q |
118 |
catctgcacattgtgtctttaaagaagataaattaacattagcagcaatagcctgatgcatttgttgcagcaatagagattgctagtttgaaaaggccat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||| || |||||| || ||||| |
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| T |
4240 |
catctgcacattgtgtctttaaagaagataaattaacatcagcagcaatggccagatgcatttgttgcagcaacagagatttctggtttgagaaagccat |
4141 |
T |
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| Q |
218 |
catgaatgagagggatacataatcagatgctatattgtcgctgtcgggtttatattcaatcacaaaatcaaagc |
291 |
Q |
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|||||||||| |||||| | | | |||| | ||||||| || | | |||||||||||||||||||||||||| |
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| T |
4140 |
catgaatgagcgggataaagcaacggatgttgtattgtctttgccagatttatattcaatcacaaaatcaaagc |
4067 |
T |
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