View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12334_high_1 (Length: 1074)

Name: NF12334_high_1
Description: NF12334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12334_high_1
NF12334_high_1
[»] chr6 (17 HSPs)
chr6 (70-662)||(24916060-24916643)
chr6 (930-1057)||(19479079-19479205)
chr6 (662-878)||(19478700-19478931)
chr6 (930-1054)||(10486038-10486161)
chr6 (930-1057)||(17289331-17289458)
chr6 (930-1051)||(16834845-16834967)
chr6 (662-873)||(17289607-17289828)
chr6 (930-1057)||(22702668-22702794)
chr6 (608-662)||(12502020-12502074)
chr6 (731-864)||(17280926-17281072)
chr6 (608-662)||(18642300-18642354)
chr6 (608-662)||(34841522-34841576)
chr6 (609-662)||(12513101-12513154)
chr6 (951-1043)||(12797468-12797560)
chr6 (715-802)||(10485752-10485837)
chr6 (715-757)||(14450649-14450691)
chr6 (805-863)||(28696992-28697050)
[»] chr5 (20 HSPs)
chr5 (661-891)||(14374672-14374918)
chr5 (662-864)||(13581981-13582197)
chr5 (662-891)||(7805622-7805867)
chr5 (930-1057)||(24775780-24775905)
chr5 (930-1051)||(36424928-36425050)
chr5 (930-1051)||(39519675-39519797)
chr5 (930-1057)||(17505622-17505748)
chr5 (930-1046)||(558059-558176)
chr5 (930-1051)||(36940873-36940995)
chr5 (930-1051)||(41998006-41998127)
chr5 (930-1057)||(41854138-41854264)
chr5 (930-1057)||(42020240-42020366)
chr5 (930-1051)||(26668568-26668690)
chr5 (930-1051)||(26940165-26940287)
chr5 (930-1057)||(42020531-42020657)
chr5 (608-662)||(27945667-27945721)
chr5 (608-662)||(32973326-32973380)
chr5 (608-662)||(40891837-40891891)
chr5 (609-662)||(29616494-29616547)
chr5 (803-883)||(1413259-1413342)
[»] chr1 (27 HSPs)
chr1 (661-864)||(10106619-10106836)
chr1 (662-861)||(13891386-13891598)
chr1 (662-876)||(26650428-26650656)
chr1 (662-857)||(38734711-38734919)
chr1 (930-1057)||(5725666-5725791)
chr1 (662-803)||(31289407-31289547)
chr1 (930-1051)||(10136615-10136737)
chr1 (930-1051)||(25845046-25845168)
chr1 (930-1057)||(27711990-27712116)
chr1 (930-1057)||(37408838-37408964)
chr1 (657-803)||(14582400-14582546)
chr1 (660-856)||(39746672-39746880)
chr1 (608-661)||(51523355-51523408)
chr1 (806-858)||(19406338-19406390)
chr1 (662-756)||(5602170-5602264)
chr1 (608-662)||(8471343-8471397)
chr1 (608-662)||(48385151-48385205)
chr1 (930-1036)||(16036903-16037011)
chr1 (608-662)||(2475095-2475149)
chr1 (608-662)||(48407414-48407468)
chr1 (610-662)||(45363057-45363109)
chr1 (608-662)||(17676282-17676336)
chr1 (608-662)||(33167300-33167354)
chr1 (803-864)||(12179279-12179340)
chr1 (610-662)||(47297522-47297574)
chr1 (608-649)||(18317727-18317768)
chr1 (768-805)||(19406287-19406324)
[»] chr8 (21 HSPs)
chr8 (930-1062)||(19430975-19431107)
chr8 (930-1062)||(19567124-19567256)
chr8 (662-891)||(19430582-19430826)
chr8 (662-891)||(19566731-19566975)
chr8 (662-878)||(19436037-19436268)
chr8 (662-878)||(19572186-19572417)
chr8 (662-891)||(13584719-13584968)
chr8 (930-1057)||(21648504-21648629)
chr8 (661-878)||(33616063-33616291)
chr8 (930-1051)||(4241689-4241811)
chr8 (661-876)||(31031124-31031350)
chr8 (930-1057)||(21959746-21959874)
chr8 (930-1057)||(32011245-32011371)
chr8 (608-662)||(15056660-15056714)
chr8 (930-1043)||(17021556-17021669)
chr8 (930-1043)||(17551993-17552106)
chr8 (608-662)||(30529598-30529652)
chr8 (608-659)||(38205192-38205243)
chr8 (608-662)||(1633380-1633434)
chr8 (608-662)||(1955255-1955309)
chr8 (930-1054)||(8329985-8330110)
[»] chr4 (31 HSPs)
chr4 (662-838)||(653592-653782)
chr4 (661-856)||(10119805-10120013)
chr4 (930-1057)||(24491031-24491157)
chr4 (930-1057)||(13696058-13696183)
chr4 (930-1057)||(13711671-13711796)
chr4 (930-1057)||(8984707-8984833)
chr4 (930-1057)||(13701177-13701303)
chr4 (930-1057)||(21304255-21304381)
chr4 (930-1057)||(7899558-7899686)
chr4 (930-1051)||(37263247-37263369)
chr4 (930-1057)||(36354860-36354986)
chr4 (930-1057)||(39999788-39999914)
chr4 (930-1057)||(54343922-54344048)
chr4 (930-1057)||(13687404-13687529)
chr4 (930-1051)||(19907578-19907699)
chr4 (957-1057)||(54992167-54992267)
chr4 (608-662)||(3530231-3530285)
chr4 (608-662)||(8994799-8994853)
chr4 (608-662)||(13113577-13113631)
chr4 (930-1051)||(19103262-19103383)
chr4 (608-662)||(34434504-34434558)
chr4 (608-662)||(34463511-34463565)
chr4 (608-662)||(56054336-56054390)
chr4 (662-803)||(24490746-24490882)
chr4 (608-662)||(3615220-3615274)
chr4 (608-662)||(33607062-33607116)
chr4 (930-1037)||(33467759-33467866)
chr4 (608-662)||(16171824-16171878)
chr4 (609-661)||(28447291-28447343)
chr4 (803-870)||(24490664-24490733)
chr4 (608-658)||(28901037-28901087)
[»] chr3 (29 HSPs)
chr3 (662-891)||(53120072-53120314)
chr3 (662-855)||(13022636-13022842)
chr3 (662-891)||(33088616-33088857)
chr3 (662-878)||(38436270-38436498)
chr3 (930-1057)||(17358866-17358991)
chr3 (930-1057)||(3481369-3481495)
chr3 (930-1057)||(15767441-15767567)
chr3 (930-1057)||(20095036-20095162)
chr3 (930-1051)||(3673929-3674051)
chr3 (930-1051)||(23664805-23664927)
chr3 (930-1051)||(18468502-18468624)
chr3 (715-859)||(20810995-20811152)
chr3 (611-662)||(26162503-26162554)
chr3 (608-662)||(6045304-6045358)
chr3 (608-662)||(10424628-10424682)
chr3 (930-1051)||(20521250-20521371)
chr3 (608-662)||(35472249-35472303)
chr3 (608-662)||(43475503-43475557)
chr3 (610-662)||(49027382-49027434)
chr3 (930-1051)||(8884534-8884655)
chr3 (608-662)||(30415432-30415486)
chr3 (931-1046)||(12970498-12970613)
chr3 (731-803)||(26962676-26962748)
chr3 (617-659)||(42564026-42564068)
chr3 (731-803)||(11777226-11777298)
chr3 (608-662)||(4874079-4874133)
chr3 (608-662)||(33188040-33188094)
chr3 (806-859)||(26707437-26707490)
chr3 (803-856)||(26929298-26929351)
[»] chr2 (16 HSPs)
chr2 (662-885)||(42915118-42915356)
chr2 (930-1051)||(30652204-30652326)
chr2 (930-1057)||(44759022-44759148)
chr2 (930-1051)||(9184101-9184223)
chr2 (930-1045)||(17974040-17974156)
chr2 (930-1057)||(42727870-42727996)
chr2 (930-1051)||(44630171-44630292)
chr2 (662-859)||(5089661-5089872)
chr2 (930-1057)||(27557398-27557526)
chr2 (608-661)||(6363478-6363531)
chr2 (608-662)||(4279180-4279234)
chr2 (930-1046)||(25483463-25483579)
chr2 (930-1046)||(25491069-25491185)
chr2 (608-662)||(7585505-7585559)
chr2 (608-662)||(7763144-7763198)
chr2 (804-856)||(39959759-39959811)
[»] scaffold0011 (3 HSPs)
scaffold0011 (930-1057)||(2569-2695)
scaffold0011 (662-864)||(2204-2420)
scaffold0011 (662-803)||(7532-7674)
[»] chr7 (23 HSPs)
chr7 (662-891)||(28291842-28292083)
chr7 (662-884)||(24528946-24529183)
chr7 (662-852)||(33226916-33227113)
chr7 (662-856)||(7357920-7358127)
chr7 (930-1057)||(33238722-33238848)
chr7 (930-1057)||(47994519-47994645)
chr7 (662-803)||(9973921-9974062)
chr7 (608-662)||(32749006-32749060)
chr7 (957-1055)||(7018264-7018361)
chr7 (957-1055)||(7033622-7033719)
chr7 (608-662)||(40690378-40690432)
chr7 (611-662)||(26815178-26815229)
chr7 (611-662)||(32127218-32127269)
chr7 (608-662)||(22659960-22660014)
chr7 (948-1057)||(17496419-17496526)
chr7 (948-1057)||(17556688-17556795)
chr7 (608-660)||(42881650-42881702)
chr7 (608-662)||(36521542-36521596)
chr7 (968-1051)||(2596099-2596181)
chr7 (930-1051)||(12802571-12802692)
chr7 (608-662)||(40300874-40300928)
chr7 (662-704)||(10437414-10437456)
chr7 (662-704)||(10451124-10451166)
[»] scaffold0166 (1 HSPs)
scaffold0166 (930-1057)||(18163-18289)
[»] scaffold0014 (1 HSPs)
scaffold0014 (930-1057)||(27092-27218)
[»] scaffold0132 (2 HSPs)
scaffold0132 (662-803)||(2421-2562)
scaffold0132 (662-803)||(10381-10522)
[»] scaffold0061 (1 HSPs)
scaffold0061 (930-1057)||(48561-48689)
[»] scaffold0017 (1 HSPs)
scaffold0017 (930-1057)||(149944-150072)
[»] scaffold0067 (3 HSPs)
scaffold0067 (930-1057)||(33034-33160)
scaffold0067 (806-875)||(33456-33527)
scaffold0067 (731-789)||(33368-33426)
[»] scaffold0015 (1 HSPs)
scaffold0015 (930-1057)||(212974-213102)
[»] scaffold0060 (1 HSPs)
scaffold0060 (930-1057)||(51516-51644)
[»] scaffold0004 (1 HSPs)
scaffold0004 (611-662)||(105889-105940)
[»] scaffold0021 (1 HSPs)
scaffold0021 (608-662)||(110175-110229)
[»] scaffold0070 (2 HSPs)
scaffold0070 (930-1057)||(59769-59897)
scaffold0070 (930-1057)||(63971-64099)
[»] scaffold0690 (1 HSPs)
scaffold0690 (930-1037)||(6523-6630)
[»] scaffold1454 (1 HSPs)
scaffold1454 (608-662)||(324-378)


Alignment Details
Target: chr6 (Bit Score: 509; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 70 - 662
Target Start/End: Original strand, 24916060 - 24916643
Alignment:
Q  70 gatgaatgctttgatctgaatatggatgctagtgcagttgtgcttcgattagtggcatttaaagatggtaatatgtccctgcaacaaaaacaaggaaaaa 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  24916060 gatgaatgctttgatctgaatatggatgctagtgcagttgtgcttcgattagtggcatt-aaagatggtgatatgtccctgcaacaaaaacaaggaaaaa 24916158  T
Q  170 acattgctactaaagatctcaaaaagttactcattcaagaaagacaacaactctccattagaaacacaaaccagccaggtttcttgaaaggaaagcaagt 269  Q
    |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24916159 acattgctact--------caaaaagttactcattcaagaaagacaacaactctccattagaaacacaaaccagccaggtttcttgaaaggaaagcaagt 24916250  T
Q  270 caaagacatggccaggtttcttcaaaatgaacaactgaagatatggatgaagataatctgtttggatcagaagcctatctgcttgggctaacaatcaagc 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24916251 caaagacatggccaggtttcttcaaaatgaacaactgaagatatggatgaagataatctgtttggatcagaagcctatctgcttgggctaacaatcaagc 24916350  T
Q  370 tattatgaatcatcatttgcttaggtttaactcttcccaatgtccaatccttttagaatttggctctaacatgtgttttgcaggttgagaaagaac-nnn 468  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        
T  24916351 ta-tatgaatcatcatttgcttaggtttaactcttcccaatgtccaatccttttagaattgggctctaacatgtgttttgcaggttgagaaagaacaaaa 24916449  T
Q  469 nnnnnctacaattaagagactggaacgaatatggatgcaagacgaagatagtatagaagttgtgaaacaagcctggaatagtaatggtagtgaaaggatt 568  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24916450 aaaaactacaattaagagactggaacgaatatggatgcaagacgaagatagtatagaagttgtgaaacaagcctggaatagtaatggtagtgaaaggatt 24916549  T
Q  569 ctttctctcaataacactattgaagctattcatgattgaggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24916550 ctttctctcaataacactattgaagctattcatgattgaggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 24916643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 19479079 - 19479205
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  19479079 ctatctcagacatagaaaccacacactaaccctttcttaggtgtattctaaaagcccgtgcgttt-aaggccatgcacgtgtatcctggttttaacgaat 19479177  T
Q  1030 gctctaggaattctgcctcgaaattcca 1057  Q
    ||||||||||||||||||||||||||||    
T  19479178 gctctaggaattctgcctcgaaattcca 19479205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 662 - 878
Target Start/End: Complemental strand, 19478931 - 19478700
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||||      
T  19478931 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19478833  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||||||||||||||||||||| ||| ||||| |||             ||||||||||||||||||||||||||||||||||||||||||||    
T  19478832 agccacaccaactagaaagtgtttatataagggtagagtaacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 19478733  T
Q  848 catatatat--cacgcgcgacgacgccgccgtc 878  Q
     ||||||||  |||||||||||||| |||||||    
T  19478732 tatatatatcacacgcgcgacgacgacgccgtc 19478700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 930 - 1054
Target Start/End: Original strand, 10486038 - 10486161
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    |||||||| ||||| |  ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  10486038 ctatctcaaacatagaatccacacaaataccctttcttaggtgtattctaaaagcccgtgcgttt-aaggccatgcacgtgtatcccggttttaacgaac 10486136  T
Q  1030 gctctaggaattctgcctcgaaatt 1054  Q
    |||||||||||||||||||||||||    
T  10486137 gctctaggaattctgcctcgaaatt 10486161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 17289458 - 17289331
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    |||||||||||||| |  ||| |||||| |||||||||||||||||||||||||||||||| ||| |||| || |||| | |||   |||||||||||||    
T  17289458 ctatctcagacatagaatccagacacaatccctttcttaggtgtattctaaaagcccgtgcatttaaaggacaggcacatttatgttggttttaacgaat 17289359  T
Q  1030 gctctaggaattctgcctcgaaattcca 1057  Q
    ||||||||||||||||||||||||||||    
T  17289358 gctctaggaattctgcctcgaaattcca 17289331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 930 - 1051
Target Start/End: Complemental strand, 16834967 - 16834845
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || |||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||    
T  16834967 ctatctcagacatagaacccacacacaaaccttttcctaaggtgtattctaaaagctcgtgcgttttatggccctgcacgtctatcccggttttaacgaa 16834868  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     | |||||| |||||||| ||||    
T  16834867 cgttctaggtattctgccccgaa 16834845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 662 - 873
Target Start/End: Original strand, 17289607 - 17289828
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||||      
T  17289607 tgttggaacactagttgaatctagtgagaaaattggat-agaaaaa-cacaatgtaagaactagtgtg--tgtgtgacttaaaaatgtcccacattggtg 17289702  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  ||||| || ||||||||||||| ||| ||||||||             |||||||  |||||||||||| |||| ||||| ||||||||||||    
T  17289703 agccacaccaacaagcaagtgtttatataagggtagagtgacatccaaggatgtgcccttggactacccacttttgcgaacaggtgagcgcttacaaaaa 17289802  T
Q  848 catatatatcacgcgcgacgacgccg 873  Q
    ||||||||||||| |||||| |||||    
T  17289803 catatatatcacgtgcgacgccgccg 17289828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 22702794 - 22702668
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  22702794 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 22702697  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  22702696 tgctctaggaattctgcctcgaaattcca 22702668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 12502074 - 12502020
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||    
T  12502074 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttcatccat 12502020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 731 - 864
Target Start/End: Original strand, 17280926 - 17281072
Alignment:
Q  731 tgtgtgacttaaaaatgtcccacattgggtagtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtaccca 817  Q
    ||||||||||||||||||  ||||||||  || |||  ||||||| ||||||||||||| ||| |||||||||             |||| | |||||||    
T  17280926 tgtgtgacttaaaaatgtttcacattggtgagccatatcaactagcaagtgtttatataagggtagagtgacctccaagggtgtgcccttcgcgtaccca 17281025  T
Q  818 cttttgtgaacgggtgaacgcttacaaaaacatatatatcacgcgcg 864  Q
    ||||||  ||||||||| |||||||||||||| ||||||||||||||    
T  17281026 cttttgcaaacgggtgagcgcttacaaaaacaaatatatcacgcgcg 17281072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 18642354 - 18642300
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||||| ||||||||||||  |||||||| |||||||||||||||||||||    
T  18642354 ggttttgcattaaatttcaatcaatcatcctctgttccaaacaactttaatccat 18642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 34841576 - 34841522
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  34841576 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 34841522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 609 - 662
Target Start/End: Complemental strand, 12513154 - 12513101
Alignment:
Q  609 gttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||    
T  12513154 gttttgcctcaaatttcaatcacccatcctctgttccaaacaactttcatccat 12513101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 951 - 1043
Target Start/End: Complemental strand, 12797560 - 12797468
Alignment:
Q  951 cacacaaacccttt-cttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaatgctctaggaattct 1043  Q
    |||||||||| ||| || ||||||||||||||||||| ||||||  | ||||||| |||| ||||||  |||||||||| ||||||||||||||    
T  12797560 cacacaaaccttttactaaggtgtattctaaaagcccatgcgtta-atggccatgtacgtctatcccatttttaacgaacgctctaggaattct 12797468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 715 - 802
Target Start/End: Complemental strand, 10485837 - 10485752
Alignment:
Q  715 taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggtagtcatcccaactagaaagtgtttatatacgggaagagtgac 802  Q
    ||||||||||||||  |||| ||||||||||||| |||||||||  || ||  |||||||| ||||||||||||| ||| ||||||||    
T  10485837 taagaactagtgtg--tgtgagacttaaaaatgttccacattggtgagccacaccaactagcaagtgtttatataagggtagagtgac 10485752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 715 - 757
Target Start/End: Original strand, 14450649 - 14450691
Alignment:
Q  715 taagaactagtgtggttgtgtgacttaaaaatgtcccacattg 757  Q
    ||||||||||||||  |||||||||||||||||||||||||||    
T  14450649 taagaactagtgtgagtgtgtgacttaaaaatgtcccacattg 14450691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 805 - 863
Target Start/End: Original strand, 28696992 - 28697050
Alignment:
Q  805 cttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatcacgcgc 863  Q
    |||||||||||||||||||| |||| |||| |||||| ||||| | |||||||||||||    
T  28696992 cttggggtacccacttttgtaaacgagtgagcgcttagaaaaataaatatatcacgcgc 28697050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 3e-85; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 661 - 891
Target Start/End: Complemental strand, 14374918 - 14374672
Alignment:
Q  661 atgttggaacactagttcaatctagtgagaaatttggatgagaataagcactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14374918 atgttggaacactagttcaatctagtgagaagtttggatgagaataagcactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 14374819  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    ||||| ||||||||||||||||||||||| ||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||    
T  14374818 agtcaccccaactagaaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 14374719  T
Q  848 catatatatcacgcg---cgacgacgccgccgtctgaccgaaccggg 891  Q
    |||||||||  ||||   |||||||||||||||||| ||||||||||    
T  14374718 catatatatatcgcgcgacgacgacgccgccgtctgtccgaaccggg 14374672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 662 - 864
Target Start/End: Original strand, 13581981 - 13582197
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |    
T  13581981 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacattggtt 13582080  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||    
T  13582081 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 13582180  T
Q  848 catatatatcacgcgcg 864  Q
    |||||||||||||||||    
T  13582181 catatatatcacgcgcg 13582197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 662 - 891
Target Start/End: Complemental strand, 7805867 - 7805622
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    ||||||||||||||||||||||||||||||| |||  |||| ||||  ||||| || ||||||||||||||||||||||||||||||||||||||||| |    
T  7805867 tgttggaacactagttcaatctagtgagaaaattgattgaggataattactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 7805768  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||    
T  7805767 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 7805668  T
Q  848 catatatatcacgcgcg--acgacgccgccgtctgaccgaaccggg 891  Q
     || |||||||||||||  |||||||||||||| ||||||||||||    
T  7805667 tatgtatatcacgcgcgcaacgacgccgccgtccgaccgaaccggg 7805622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 24775905 - 24775780
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||||||||||||||  | |||| ||||||| |||||| ||||||||| ||    
T  24775905 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgtat 24775808  T
Q  1030 gctctaggaattctgcctcgaaattcca 1057  Q
    ||||||||||||||||||||||||||||    
T  24775807 gctctaggaattctgcctcgaaattcca 24775780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 36424928 - 36425050
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || |||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||    
T  36424928 ctatctcagacatagaacccacacacaaaccttttcctaaggtgtattctaaaagctcgtgcgttttatggccttgcacgtctatcccggttttaacgaa 36425027  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     | |||||| |||||||| ||||    
T  36425028 cgttctaggtattctgccccgaa 36425050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 39519675 - 39519797
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || |||||||||||||||| ||||||||||| |||| ||||||| |||||| |||||||||||    
T  39519675 ctatctcagacatagaacccacacacaaaccttttcctaaggtgtattctaaaagctcgtgcgttttatggccctgcacgtctatcccagttttaacgaa 39519774  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     | |||||| |||||||| ||||    
T  39519775 cgttctaggtattctgccccgaa 39519797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 17505622 - 17505748
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||| ||    
T  17505622 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacaaa 17505719  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  17505720 tgctctaggaattctgcctcgaaattcca 17505748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 930 - 1046
Target Start/End: Original strand, 558059 - 558176
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttc--ttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacga 1027  Q
    |||||||||||||| |  ||||||||||||| |||   | ||||||||||||||||||||||||||| | |||| ||||||| |||||||||||||||||    
T  558059 ctatctcagacatagaacccacacacaaacctttttcataaggtgtattctaaaagcccgtgcgttt-atggccttgcacgtctatcccggttttaacga 558157  T
Q  1028 atgctctaggaattctgcc 1046  Q
    ||| |||||| ||||||||    
T  558158 atgttctaggtattctgcc 558176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 930 - 1051
Target Start/End: Complemental strand, 36940995 - 36940873
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || |||||||||||||| ||||||| ||||| |||| ||||||| |||||||||||||| |||    
T  36940995 ctatctcagacatagaacccacacacaaaccttttcataaggtgtattctaaaaacccgtgctttttatggccttgcacgtctatcccggttttaatgaa 36940896  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     |||||||| ||| |||| ||||    
T  36940895 cgctctaggtattttgccccgaa 36940873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 41998006 - 41998127
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || ||||||||||||||||||||||| |||| |||| ||||||| |||||| |||||||||||    
T  41998006 ctatctcagacatagaacccacacacaaaccttttcataaggtgtattctaaaagcccgtgcg-tttatggccctgcacgtctatcccagttttaacgaa 41998104  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     |||||||| ||| |||| ||||    
T  41998105 cgctctaggtattttgccccgaa 41998127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 41854138 - 41854264
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  41854138 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 41854235  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    ||||||| |||||||||||| ||||||||    
T  41854236 tgctctaagaattctgcctcaaaattcca 41854264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 42020240 - 42020366
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| | |||||||||  | |||| ||||| | |||||| |||||||||||    
T  42020240 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaaggccgtgcgtta-atggccttgcacatctatcccagttttaacgaa 42020337  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  42020338 tgctctaggaattctgcctcgaaattcca 42020366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 26668568 - 26668690
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||| | |||| || |||||||||||||||| |||||||||||  | ||||||||| ||||| ||||||||||||    
T  26668568 ctatctcagacatagaacccacacacaaatcttttcctaaggtgtattctaaaagctcgtgcgttttattgtcatgcacgtctatcctggttttaacgaa 26668667  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     | |||||| |||||||| ||||    
T  26668668 cgttctaggtattctgccccgaa 26668690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 26940165 - 26940287
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||| | |||| || |||||||||||||||| |||||||||||  | ||||||||| ||||| ||||||||||||    
T  26940165 ctatctcagacatagaacccacacacaaatcttttcctaaggtgtattctaaaagctcgtgcgttttattgtcatgcacgtctatcctggttttaacgaa 26940264  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     | |||||| |||||||| ||||    
T  26940265 cgttctaggtattctgccccgaa 26940287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 42020531 - 42020657
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||| ||| |||||||| |  ||||||||  | |||| ||||| | |||||| |||||||||||    
T  42020531 ctatctcagacataggacccacacacaa-ccttttcttagttgttttctaaaaaggtcgtgcgtta-atggccttgcacatctatcccagttttaacgaa 42020628  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||| ||||||||||||||||||||    
T  42020629 tgctctagaaattctgcctcgaaattcca 42020657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 27945721 - 27945667
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  27945721 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 27945667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 32973326 - 32973380
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  32973326 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 32973380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 40891891 - 40891837
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  40891891 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 40891837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 609 - 662
Target Start/End: Original strand, 29616494 - 29616547
Alignment:
Q  609 gttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    ||||||| ||||||||||||||  |||||||| |||||||||||||||||||||    
T  29616494 gttttgcctcaaatttcaatcactcatcctctattccaaacaactttaatccat 29616547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 803 - 883
Target Start/End: Original strand, 1413259 - 1413342
Alignment:
Q  803 cccttggggtacccacttttgtgaacgg-gtgaacgcttac--aaaaacatatatatcacgcgcgacgacgccgccgtctgacc 883  Q
    |||||||||||||||||||||||||||| |||| ||||| |  ||||  |||||||  ||||||||||||| ||||||| ||||    
T  1413259 cccttggggtacccacttttgtgaacggagtgagcgcttgccaaaaattatatataagacgcgcgacgacgacgccgtccgacc 1413342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 5e-62; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 661 - 864
Target Start/End: Complemental strand, 10106836 - 10106619
Alignment:
Q  661 atgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattggg 759  Q
    |||||||||||||||||||||||||||||||| |||  |||||||||  ||||| || |||||||||||||||||||||||||||||||||||||||||     
T  10106836 atgttggaacactagttcaatctagtgagaaaattgattgagaataattactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggt 10106737  T
Q  760 tagtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 846  Q
    |||||| ||||||||| ||||||||||||| ||| ||||||||             ||||||||||||||||||||||||||||||||||||||||||||    
T  10106736 tagtcaccccaactagtaagtgtttatataaggggagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 10106637  T
Q  847 acatatatatcacgcgcg 864  Q
    ||||||||||||||||||    
T  10106636 acatatatatcacgcgcg 10106619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 662 - 861
Target Start/End: Complemental strand, 13891598 - 13891386
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || |||||||||||||   ||||||||||||||||||||||||||||      
T  13891598 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtaagtgtgtgacttaaaaatgtcccacattggtg 13891500  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||||||||||||||||||||| ||||||||||||             |||||| |||||||||||||||||||||||||| |||||||||||    
T  13891499 agccacaccaactagaaagtgtttatataagggaagagtgacctccaaggatgtgcccttgaggtacccacttttgtgaacgggtgaatgcttacaaaaa 13891400  T
Q  848 catatatatcacgc 861  Q
    ||||||||||||||    
T  13891399 catatatatcacgc 13891386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 662 - 876
Target Start/End: Original strand, 26650428 - 26650656
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||||      
T  26650428 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 26650526  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||   ||||||||||||||| ||||| ||| |||||||||             ||||||||||||||||||||||||||||||||||||||||||||    
T  26650527 agccacatcaactagaaagtgtt-atataagggtagagtgacctccaaggatgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 26650625  T
Q  848 catatatat--cacgcgcgacgacgccgccg 876  Q
     ||||||||  |||||||||||||| |||||    
T  26650626 tatatatatcacacgcgcgacgacgacgccg 26650656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 662 - 857
Target Start/End: Complemental strand, 38734919 - 38734711
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  |||||||||||||||||||||| |||||      
T  38734919 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccatattggtg 38734821  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||||||||||||||||||||| ||| ||||||||             ||||| || ||||||||||||||||||||||||||||||||||||    
T  38734820 agccacaccaactagaaagtgtttatataagggtagagtgaccttcaaaggtgtgcccttaggatacccacttttgtgaacgggtgaacgcttacaaaaa 38734721  T
Q  848 catatatatc 857  Q
    ||||||||||    
T  38734720 catatatatc 38734711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 5725666 - 5725791
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||||||||||||||  | |||| ||||||| |||||| ||||||||||||    
T  5725666 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaat 5725763  T
Q  1030 gctctaggaattctgcctcgaaattcca 1057  Q
    ||||||||||||||||||||||||||||    
T  5725764 gctctaggaattctgcctcgaaattcca 5725791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 662 - 803
Target Start/End: Complemental strand, 31289547 - 31289407
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggta 761  Q
    |||||||||||||||| |||||||||||||| |||||| |||| |  || |  ||||||||||||||  ||||||||||||||||||||||||||||  |    
T  31289547 tgttggaacactagttgaatctagtgagaaaattggataagaaaacacaatg-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 31289449  T
Q  762 gtcatcccaactagaaagtgtttatatacgggaagagtgacc 803  Q
    | ||  |||||||||||||||||||||| ||| |||||||||    
T  31289448 gccacaccaactagaaagtgtttatataagggtagagtgacc 31289407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 10136615 - 10136737
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || |||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||    
T  10136615 ctatctcagacatagaacccacacacaaaccttttcctaaggtgtattctaaaagctcgtgcgttttatggccctgcacgtctatcccggttttaacgaa 10136714  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     | |||||| |||||||| ||||    
T  10136715 cgttctaggtattctgccccgaa 10136737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 25845046 - 25845168
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || |||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||    
T  25845046 ctatctcagacatagaacccacacacaaaccttttcctaaggtgtattctaaaagctcgtgcgttttatggccctgcacgtctatcccggttttaacgaa 25845145  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     | |||||| |||||||| ||||    
T  25845146 cgttctaggtattctgccccgaa 25845168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 27711990 - 27712116
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  27711990 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 27712087  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  27712088 tgctctaggaattctgcctcgaaattcca 27712116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 37408964 - 37408838
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  37408964 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 37408867  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  37408866 tgctctaggaattctgcctcgaaattcca 37408838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 657 - 803
Target Start/End: Complemental strand, 14582546 - 14582400
Alignment:
Q  657 atccatgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacat 755  Q
    |||| |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  |||||||||||||||||||||||||    
T  14582546 atccttgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 14582448  T
Q  756 tgggtagtcatcccaactagaaagtgtttatatacgggaagagtgacc 803  Q
    |||  |  ||  ||||||||||| | |||||||| ||| |||||||||    
T  14582447 tggtgaaccacaccaactagaaattttttatataagggtagagtgacc 14582400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 660 - 856
Target Start/End: Original strand, 39746672 - 39746880
Alignment:
Q  660 catgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgg 758  Q
    |||||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||  || |||||    
T  39746672 catgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtttcatattgg 39746770  T
Q  759 gtagtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggggtacccacttttgtgaacgggtgaacgcttacaaa 845  Q
      || ||  |||||||||||||||||||||| ||| ||||| ||             |||||  |||||||||||||||||||| |||||||||||||||    
T  39746771 tgagccacaccaactagaaagtgtttatataagggtagagtaacctccaaggatgtgcccttaaggtacccacttttgtgaacgagtgaacgcttacaaa 39746870  T
Q  846 aacatatatat 856  Q
    || ||||||||    
T  39746871 aa-atatatat 39746880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 608 - 661
Target Start/End: Complemental strand, 51523408 - 51523355
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatcca 661  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  51523408 ggttttgcatcaaatttcaatcacccatcctctgttccaaacaactttaatcca 51523355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 806 - 858
Target Start/End: Original strand, 19406338 - 19406390
Alignment:
Q  806 ttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatca 858  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  19406338 ttggggtacccactttcgtgaacggatgaacgcttacaaaaacatatatatca 19406390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 662 - 756
Target Start/End: Original strand, 5602170 - 5602264
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacatt 756  Q
    |||||||||||||||| ||| |||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||    
T  5602170 tgttggaacactagttgaatttagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 5602264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 8471397 - 8471343
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  8471397 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 8471343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 48385151 - 48385205
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  48385151 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 48385205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 930 - 1036
Target Start/End: Original strand, 16036903 - 16037011
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta---ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacg 1026  Q
    |||||||||||||| |  ||||||||||||| |||| ||   ||||||||||||||||| ||||| |||| |||| ||||||| |||||  |||||||||    
T  16036903 ctatctcagacatataacccacacacaaaccttttcctataaggtgtattctaaaagcctgtgcg-tttatggccctgcacgtctatcctagttttaacg 16037001  T
Q  1027 aatgctctag 1036  Q
    || |||||||    
T  16037002 aacgctctag 16037011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 2475095 - 2475149
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  2475095 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 2475149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 48407468 - 48407414
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| ||||||||||||||  |||||||| |||||||||||||||||||||    
T  48407468 ggttttgcctcaaatttcaatcactcatcctctgttccaaacaactttaatccat 48407414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 610 - 662
Target Start/End: Complemental strand, 45363109 - 45363057
Alignment:
Q  610 ttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    ||||||||||||||| ||||| ||||||||| |||||||| ||||||||||||    
T  45363109 ttttgcatcaaattttaatcacccatcctctgttccaaacgactttaatccat 45363057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 17676282 - 17676336
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||||| || ||||||||||| ||||||    
T  17676282 ggttttgcctcaaatttcaatcacccatcctctgtttcaaacaacttttatccat 17676336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 33167354 - 33167300
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    ||||||| ||||||||||||||| | |||||||  ||||||||||||||||||||    
T  33167354 ggttttgaatcaaatttcaatcaccaatcctctaatccaaacaactttaatccat 33167300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 803 - 864
Target Start/End: Complemental strand, 12179340 - 12179279
Alignment:
Q  803 cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatcacgcgcg 864  Q
    |||||||| |||||||| ||||||||| |||| | |||| ||||| ||||||||||||||||    
T  12179340 cccttgggatacccactgttgtgaacgagtgagcacttagaaaaatatatatatcacgcgcg 12179279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 610 - 662
Target Start/End: Original strand, 47297522 - 47297574
Alignment:
Q  610 ttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||| ||||||||||||||  |||||||| |||||||||||||| ||||||    
T  47297522 ttttgcctcaaatttcaatcactcatcctctgttccaaacaactttcatccat 47297574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 608 - 649
Target Start/End: Original strand, 18317727 - 18317768
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaac 649  Q
    |||||||||||||||||||| || ||||||||| ||||||||    
T  18317727 ggttttgcatcaaatttcaaccacccatcctctgttccaaac 18317768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 768 - 805
Target Start/End: Original strand, 19406287 - 19406324
Alignment:
Q  768 ccaactagaaagtgtttatatacgggaagagtgacccc 805  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  19406287 ccaactagaaagtgtttatataagggtagagtgacccc 19406324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 1e-56; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 930 - 1062
Target Start/End: Original strand, 19430975 - 19431107
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    |||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19430975 ctatctcagacatagaaaccacgcacaaaccctttcttaggtgtattctaaaagctcgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 19431074  T
Q  1030 gctctaggaattctgcctcgaaattccacaggt 1062  Q
    |||||||||||||||||||||||||||| ||||    
T  19431075 gctctaggaattctgcctcgaaattccataggt 19431107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 930 - 1062
Target Start/End: Original strand, 19567124 - 19567256
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    |||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19567124 ctatctcagacatagaaaccacgcacaaaccctttcttaggtgtattctaaaagctcgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 19567223  T
Q  1030 gctctaggaattctgcctcgaaattccacaggt 1062  Q
    |||||||||||||||||||||||||||| ||||    
T  19567224 gctctaggaattctgcctcgaaattccataggt 19567256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 662 - 891
Target Start/End: Complemental strand, 19430826 - 19430582
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  ||||||||||||||||||||||||||||      
T  19430826 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19430728  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||||||||||||||||||||| ||| |||||||||             ||||||| ||||||||||||||||||||||||||||||||||||    
T  19430727 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttgggatacccacttttgtgaacgggtgaacgcttacaaaaa 19430628  T
Q  848 catatatatcacg--cgcgacgacgccgccgtctgaccgaaccggg 891  Q
    |||||||||||||  |||||||||||||||||||||||||||||||    
T  19430627 catatatatcacgcgcgcgacgacgccgccgtctgaccgaaccggg 19430582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 662 - 891
Target Start/End: Complemental strand, 19566975 - 19566731
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  ||||||||||||||||||||||||||||      
T  19566975 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19566877  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||||||||||||||||||||| ||| |||||||||             ||||||| ||||||||||||||||||||||||||||||||||||    
T  19566876 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttgggatacccacttttgtgaacgggtgaacgcttacaaaaa 19566777  T
Q  848 catatatatcacg--cgcgacgacgccgccgtctgaccgaaccggg 891  Q
    |||||||||||||  |||||||||||||||||||||||||||||||    
T  19566776 catatatatcacgcgcgcgacgacgccgccgtctgaccgaaccggg 19566731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 662 - 878
Target Start/End: Complemental strand, 19436268 - 19436037
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  ||||||||||||||||||||||||||||      
T  19436268 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19436170  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||||||||||||||||||||| ||| | |||||||             ||||||||||||||||||||||||| ||||||||||||||||||    
T  19436169 agccacaccaactagaaagtgtttatataagggtaaagtgacctccaagggtgtgcccttggggtacccacttttgtgaactggtgaacgcttacaaaaa 19436070  T
Q  848 catatatatcacg--cgcgacgacgccgccgtc 878  Q
    |||||||||||||  ||||||||||||||||||    
T  19436069 catatatatcacgcgcgcgacgacgccgccgtc 19436037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 662 - 878
Target Start/End: Complemental strand, 19572417 - 19572186
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  ||||||||||||||||||||||||||||      
T  19572417 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19572319  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||||||||||||||||||||| ||| | |||||||             ||||||||||||||||||||||||| ||||||||||||||||||    
T  19572318 agccacaccaactagaaagtgtttatataagggtaaagtgacctccaagggtgtgcccttggggtacccacttttgtgaactggtgaacgcttacaaaaa 19572219  T
Q  848 catatatatcacg--cgcgacgacgccgccgtc 878  Q
    |||||||||||||  ||||||||||||||||||    
T  19572218 catatatatcacgcgcgcgacgacgccgccgtc 19572186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 662 - 891
Target Start/End: Complemental strand, 13584968 - 13584719
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataag----cactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacatt 756  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||     ||| |  |||||| |||||||   |||||| ||||||||||||||||||    
T  13584968 tgttggaacactagttaaatctagtgagaaaattggataagaaaaaaaaaacacaatataagaattagtgtgagcgtgtgatttaaaaatgtcccacatt 13584869  T
Q  757 gggtagtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggggtacccacttttgtgaacgggtgaacgcttaca 843  Q
    ||  || ||  |||||||||||||||||||||||||| ||||||||             |||||||||||||||||||||||||||||||||||||||||    
T  13584868 ggtgagccacaccaactagaaagtgtttatatacgggtagagtgacatccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttaca 13584769  T
Q  844 aaaacatatatat--cacgcgcgacgacgccgccgtctgaccgaaccggg 891  Q
    |||||||||||||  ||||| |||||||||||||||| ||||||||||||    
T  13584768 aaaacatatatatcacacgcacgacgacgccgccgtccgaccgaaccggg 13584719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 21648629 - 21648504
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||||||||||||||  | |||| ||||||| |||||| ||||||||||||    
T  21648629 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaat 21648532  T
Q  1030 gctctaggaattctgcctcgaaattcca 1057  Q
    ||||||||||||||||||||||||||||    
T  21648531 gctctaggaattctgcctcgaaattcca 21648504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 661 - 878
Target Start/End: Original strand, 33616063 - 33616291
Alignment:
Q  661 atgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattggg 759  Q
    ||||||||||| ||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  | |||| |||||||||||| ||||||||     
T  33616063 atgttggaacattagttaaatctagtgagaaaattggataagaaaaatacaata-taagaactagtgtgagtatgtggcttaaaaatgtctcacattggt 33616161  T
Q  760 tagtcatcccaactagaaagtgtttatatacgggaagagtgacc------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
     || ||  |||||||||||||||||||||| ||| ||||| |||            || | |||||||||||||| ||||||| ||||||||||||||||    
T  33616162 gagccacaccaactagaaagtgtttatataagggtagagtaacctccaagggtgtgcccttgggtacccacttttatgaacggatgaacgcttacaaaaa 33616261  T
Q  848 catatatatcacgcgcgacgacgccgccgtc 878  Q
    |||||||||||| |||| |||||||||||||    
T  33616262 catatatatcacacgcg-cgacgccgccgtc 33616291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 930 - 1051
Target Start/End: Complemental strand, 4241811 - 4241689
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || |||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||    
T  4241811 ctatctcagacatagaacccacacacaaaccttttcataaggtgtattctaaaaacccgtgcgttttatggccttgcacgtctatcccggttttaacgaa 4241712  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     |||||||| ||| |||| ||||    
T  4241711 cgctctaggtattttgccccgaa 4241689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 661 - 876
Target Start/End: Complemental strand, 31031350 - 31031124
Alignment:
Q  661 atgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattggg 759  Q
    ||||||||||||||||| |||||| ||||||| |||||| |||| ||  || || ||||||||||||||  ||||||||||||||||||| ||||||||     
T  31031350 atgttggaacactagttaaatctaatgagaaaattggataagaaaaacacatta-taagaactagtgtgagtgtgtgacttaaaaatgtctcacattggt 31031252  T
Q  760 tagtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 846  Q
     || ||  ||||||||||||| |  ||||| ||| |||||||||             ||||||||||||||||||||||||||  |||||||||||||||    
T  31031251 gagccacaccaactagaaagtat--atataagggtagagtgacctccaaggatgtgcccttggggtacccacttttgtgaacg--tgaacgcttacaaaa 31031156  T
Q  847 acatatatat--cacgcgcgacgacgccgccg 876  Q
    ||||||||||  |||| |||||||||||||||    
T  31031155 acatatatatcacacgtgcgacgacgccgccg 31031124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 21959746 - 21959874
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctt--aggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacga 1027  Q
    |||||||||||||| |  || |||||||||| |||| |  | |||||||||| |||||||||||||| | |||| | ||||| |||||| ||||||||||    
T  21959746 ctatctcagacatagaacccgcacacaaaccttttccttaaagtgtattctataagcccgtgcgttt-atggccctacacgtctatcccagttttaacga 21959844  T
Q  1028 atgctctaggaattctgcctcgaaattcca 1057  Q
    | ||||||||||||||||||||||||||||    
T  21959845 acgctctaggaattctgcctcgaaattcca 21959874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 32011245 - 32011371
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| ||| |||||||  | |||| ||||||| |||||| |||||||||||    
T  32011245 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcctgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 32011342  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    ||||||||||||||||||||| |||||||    
T  32011343 tgctctaggaattctgcctcggaattcca 32011371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 15056714 - 15056660
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  15056714 ggttttgcatcaaatttcaatcacccatcctctgttccaaacaactttaatccat 15056660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 930 - 1043
Target Start/End: Original strand, 17021556 - 17021669
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  || |||||||||| ||||||| ||||||||||| |||||||||||||||  ||||||||| |  ||||||||||||||||||    
T  17021556 ctatctcagacatagaacccgcacacaaaccttttcttaaggtgtattctagaagcccgtgcgtttt-tggccatgcatggctatcccggttttaacgaa 17021654  T
Q  1029 tgctctaggaattct 1043  Q
     | |||||| |||||    
T  17021655 cgttctaggtattct 17021669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 930 - 1043
Target Start/End: Original strand, 17551993 - 17552106
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  || |||||||||| ||||||| ||||||||||| |||||||||||||||  ||||||||| |  ||||||||||||||||||    
T  17551993 ctatctcagacatagaacccgcacacaaaccttttcttaaggtgtattctagaagcccgtgcgtttt-tggccatgcatggctatcccggttttaacgaa 17552091  T
Q  1029 tgctctaggaattct 1043  Q
     | |||||| |||||    
T  17552092 cgttctaggtattct 17552106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 30529598 - 30529652
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  30529598 ggttttgcatcaaatttcaatcacccatcctctgttccaaacaactttaatccat 30529652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 608 - 659
Target Start/End: Original strand, 38205192 - 38205243
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatc 659  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  38205192 ggttttgcatcaaatttcaatcacccatcctctgttccaaacaactttaatc 38205243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 1633380 - 1633434
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  1633380 ggttttgcatcaaatttcactcacccattctcttttccaaacaactttaatccat 1633434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 1955255 - 1955309
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  1955255 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 1955309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 930 - 1054
Target Start/End: Complemental strand, 8330110 - 8329985
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctt--aggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacga 1027  Q
    |||||||||||||| |   | |||||||||| |||| |  |||||||||||| ||| | ||| |||| | |||| |||||||||||||| ||||||| ||    
T  8330110 ctatctcagacatagaactcgcacacaaaccttttccttaaggtgtattctataagtcggtgtgttt-atggccttgcacgtgtatcccagttttaatga 8330012  T
Q  1028 atgctctaggaattctgcctcgaaatt 1054  Q
    |  || ||||||||||||||| |||||    
T  8330011 acactataggaattctgcctctaaatt 8329985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 4e-53; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 662 - 838
Target Start/End: Complemental strand, 653782 - 653592
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |    
T  653782 tgttggaacactagtttaatctagtgagaaaattggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacattggtt 653683  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggggtacccacttttgtgaacgggtgaacgc 838  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||             ||||||||||||||||||||||||||||||||||||    
T  653682 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgc 653592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 661 - 856
Target Start/End: Original strand, 10119805 - 10120013
Alignment:
Q  661 atgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattggg 759  Q
    ||||||||||||||||| ||||| |||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||||     
T  10119805 atgttggaacactagttgaatctcgtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggt 10119903  T
Q  760 tagtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 846  Q
     || ||  |||||||||||||||||||||| ||| |||||||||             |||||||||||||||||||||||||||||||||||||||||||    
T  10119904 gagccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtacccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 10120003  T
Q  847 acatatatat 856  Q
    ||||||||||    
T  10120004 acatatatat 10120013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 24491031 - 24491157
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    ||||||||||| || |  ||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||  |||||| ||||    
T  24491031 ctatctcagacgtagaatccacacacaaaccctttcttaggtgtattctaaaatcccgtgtgttt-aaggtcatgcacgtgtatcccaattttaaagaat 24491129  T
Q  1030 gctctaggaattctgcctcgaaattcca 1057  Q
    ||||||||||||||||||||||||||||    
T  24491130 gctctaggaattctgcctcgaaattcca 24491157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 13696058 - 13696183
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||||||||||||||  | |||| ||||||| |||||| ||||||||||||    
T  13696058 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaat 13696155  T
Q  1030 gctctaggaattctgcctcgaaattcca 1057  Q
    ||||||||||||||||||||||||||||    
T  13696156 gctctaggaattctgcctcgaaattcca 13696183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 13711671 - 13711796
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||||||||||||||  | |||| ||||||| |||||| ||||||||||||    
T  13711671 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaat 13711768  T
Q  1030 gctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||| |||||||    
T  13711769 gctctaggaattctgcctcggaattcca 13711796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 8984833 - 8984707
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  8984833 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 8984736  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  8984735 tgctctaggaattctgcctcgaaattcca 8984707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 13701177 - 13701303
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  13701177 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 13701274  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  13701275 tgctctaggaattctgcctcgaaattcca 13701303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 21304381 - 21304255
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  21304381 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 21304284  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  21304283 tgctctaggaattctgcctcgaaattcca 21304255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 7899686 - 7899558
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctt--aggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacga 1027  Q
    |||||||||||||| |  || |||||||||| |||| |  |||||||||||| |||||||||||||| | |||| |||| ||||||||| ||||||||||    
T  7899686 ctatctcagacatagaacccgcacacaaaccttttccttaaggtgtattctataagcccgtgcgttt-atggccttgcatgtgtatcccagttttaacga 7899588  T
Q  1028 atgctctaggaattctgcctcgaaattcca 1057  Q
    | ||||||||||||||||||| ||||||||    
T  7899587 acgctctaggaattctgcctctaaattcca 7899558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 930 - 1051
Target Start/End: Complemental strand, 37263369 - 37263247
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || |||||||||||||||| ||||||||||| |||| ||||||| ||| ||||||||||||||    
T  37263369 ctatctcagacatagaacccacacacaaaccttttcctaaggtgtattctaaaagctcgtgcgttttatggccctgcacgtctattccggttttaacgaa 37263270  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     | |||||| |||||||| ||||    
T  37263269 cgttctaggtattctgccccgaa 37263247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 36354860 - 36354986
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||| ||||  | |||| ||||||| |||||| |||||||||||    
T  36354860 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtacgtta-atggccttgcacgtctatcccagttttaacgaa 36354957  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  36354958 tgctctaggaattctgcctcgaaattcca 36354986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 39999788 - 39999914
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| | |||||||||  | |||| ||||||| |||||| |||||||||||    
T  39999788 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagtccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 39999885  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  39999886 tgctctaggaattctgcctcgaaattcca 39999914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 54343922 - 54344048
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  54343922 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 54344019  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||| ||||||||||||||||||||    
T  54344020 tgctctagaaattctgcctcgaaattcca 54344048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 13687404 - 13687529
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||||||||||||||  | |||| ||||||| |||||| |||||||| |||    
T  13687404 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaactaat 13687501  T
Q  1030 gctctaggaattctgcctcgaaattcca 1057  Q
    ||||||| |||||||||||| |||||||    
T  13687502 gctctagtaattctgcctcgtaattcca 13687529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 19907578 - 19907699
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || ||||||||||||||||||||||| |||| |||| ||||||| | |||| |||||||| ||    
T  19907578 ctatctcagacatagaatccacacacaaaccttttcctaaggtgtattctaaaagcccgtgcg-tttatggccctgcacgtttgtcccagttttaacaaa 19907676  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     |||||||| |||||||| ||||    
T  19907677 cgctctaggtattctgccccgaa 19907699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 957 - 1057
Target Start/End: Original strand, 54992167 - 54992267
Alignment:
Q  957 aaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaatgctctaggaattctgcctcgaaattc 1055  Q
    |||| |||||||||||| |||||||| |||||||||||  | || | ||||||| |||||| |||||||||||||||||||||||||||||||  |||||    
T  54992167 aaccttttcttaggtgttttctaaaaagcccgtgcgtta-atggtcttgcacgtctatcccagttttaacgaatgctctaggaattctgcctcagaattc 54992265  T
Q  1056 ca 1057  Q
    ||    
T  54992266 ca 54992267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 3530231 - 3530285
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  3530231 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 3530285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 8994853 - 8994799
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  8994853 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 8994799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 13113631 - 13113577
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  13113631 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 13113577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 19103262 - 19103383
Alignment:
Q  930 ctatctcagacataaacaccacacacaaacccttt-cttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||| ||| |  ||||||| ||||||||| || ||||||||||||||||||| |||| |||| | || ||||||| |||||| ||||||| |||    
T  19103262 ctatctcagaaatagaacccacacataaacccttttctaaggtgtattctaaaagcccatgcg-tttatgaccctgcacgtctatcccagttttaatgaa 19103360  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     |||||||| |||||||| ||||    
T  19103361 cgctctaggtattctgccccgaa 19103383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 34434504 - 34434558
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  34434504 ggttttgcatcaaatttcaatcacccatcctccgttccaaacaactttaatccat 34434558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 34463511 - 34463565
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  34463511 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 34463565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 56054390 - 56054336
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||    
T  56054390 ggttttgcctcaaatttcaatcatccatcctctgttccaaacaacttcaatccat 56054336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 662 - 803
Target Start/End: Complemental strand, 24490882 - 24490746
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||    ||| |||||||||||||||| |||||      
T  24490882 tgttggaacactagttaaatctagtgagaaaattggat-agaaaaa-cacaatgtaagaactagtgtg----tgtaacttaaaaatgtcccatattggag 24490789  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc 803  Q
    || ||  |||||||| ||||||||||||| ||| |||||||||    
T  24490788 agccacaccaactagcaagtgtttatataagggtagagtgacc 24490746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 3615220 - 3615274
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  3615220 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 3615274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 33607116 - 33607062
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||||||||||||||||||  |||||||| ||| |||||||||||||||||    
T  33607116 ggttttgcatcaaatttcaatcagtcatcctctgttcaaaacaactttaatccat 33607062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 930 - 1037
Target Start/End: Complemental strand, 33467866 - 33467759
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||| | |||| || ||||||||||||||||||||| | |||| |||| ||| ||| |||||  |||||||||||    
T  33467866 ctatctcagacatagaacccacacacaaatcttttcctaaggtgtattctaaaagcccgtgtg-tttatggccctgcgcgtctatcctagttttaacgaa 33467768  T
Q  1029 tgctctagg 1037  Q
     ||||||||    
T  33467767 cgctctagg 33467759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 16171824 - 16171878
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| ||||||||||||||  |||||||| ||| |||||||||||||||||    
T  16171824 ggttttgcctcaaatttcaatcactcatcctctgttcaaaacaactttaatccat 16171878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 609 - 661
Target Start/End: Complemental strand, 28447343 - 28447291
Alignment:
Q  609 gttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatcca 661  Q
    |||||| |||||||||||||||  |||| ||| ||||||||||||||||||||    
T  28447343 gttttgtatcaaatttcaatcactcatcttctgttccaaacaactttaatcca 28447291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 803 - 870
Target Start/End: Complemental strand, 24490733 - 24490664
Alignment:
Q  803 cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatcac--gcgcgacgacg 870  Q
    |||||| |||||| || |||| |||||||||| | |||| |||||||||||||||||  |||||||||||    
T  24490733 cccttgaggtacctacatttgcgaacgggtgagcacttagaaaaacatatatatcacgtgcgcgacgacg 24490664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 608 - 658
Target Start/End: Complemental strand, 28901087 - 28901037
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaat 658  Q
    |||||||| ||||||||||||||  |||||||  |||||||||||||||||    
T  28901087 ggttttgcctcaaatttcaatcactcatcctcggttccaaacaactttaat 28901037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 7e-49; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 662 - 891
Target Start/End: Complemental strand, 53120314 - 53120072
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||||      
T  53120314 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacgatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 53120216  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||||||||||||||||||||| ||| | |||||||             ||||||||||||||||||||||||| ||||||||||||||||||    
T  53120215 agccacaccaactagaaagtgtttatataagggtacagtgacctccaagggtgtgcccttggggtacccacttttgtgaacaggtgaacgcttacaaaaa 53120116  T
Q  848 catatatatcacgcgcgacgacgccgccgtctgaccgaaccggg 891  Q
     |||||||||||||||||| |||||| |||| ||||||||||||    
T  53120115 tatatatatcacgcgcgacaacgccgtcgtccgaccgaaccggg 53120072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 662 - 855
Target Start/End: Complemental strand, 13022842 - 13022636
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  ||||||||||||||||||||||||||||      
T  13022842 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 13022744  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||| ||||||||||||||||| |||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||    
T  13022743 agccacaccaattagaaagtgtttatataagggaagagtgacctccaagggtgtgaccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 13022644  T
Q  848 catatata 855  Q
     |||||||    
T  13022643 gatatata 13022636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 662 - 891
Target Start/End: Original strand, 33088616 - 33088857
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||  |  ||||||||||||||  ||||||||||||||||||||||||||||      
T  33088616 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cataatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 33088714  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgac-------------cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||||||||||||||||||||| ||| ||||||||             |||||||||||||||||||| | ||||||||||||||||||||||    
T  33088715 agccaaaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttataaacgggtgaacgcttacaaaaa 33088814  T
Q  848 catatatatcacgcgcgacgacgccgccgtctgaccgaaccggg 891  Q
    |||||||||||| |||| ||| | ||  ||||||||||||||||    
T  33088815 catatatatcacacgcg-cgatgacgttgtctgaccgaaccggg 33088857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 662 - 878
Target Start/End: Original strand, 38436270 - 38436498
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    ||||||| ||| |||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||   |||||||||||||||||||||||||||      
T  38436270 tgttggagcaccagttaaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagcgtgtgacttaaaaatgtcccacattggtg 38436368  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacccc-------------ttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||   |||||| |||||||||||||| ||| ||||||||| |             || |||||||||||||||||||||||||||||||||||||||    
T  38436369 agccacatcaactaaaaagtgtttatataagggtagagtgaccaccaaaggtgtgctcttagggtacccacttttgtgaacgggtgaacgcttacaaaaa 38436468  T
Q  848 catatatatcacgcgcgacgacgccgccgtc 878  Q
    ||||||||||||  ||| |||||||||||||    
T  38436469 catatatatcacatgcg-cgacgccgccgtc 38436498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 17358866 - 17358991
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    ||||||||||||||    |||||||||| || ||||||| |||| |||||||||||||||||||  | |||| ||||||| |||||| ||||||||||||    
T  17358866 ctatctcagacataggacccacacacaa-ccttttcttatgtgttttctaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaat 17358963  T
Q  1030 gctctaggaattctgcctcgaaattcca 1057  Q
    ||||||||||||||||||||||||||||    
T  17358964 gctctaggaattctgcctcgaaattcca 17358991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 3481495 - 3481369
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  3481495 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 3481398  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  3481397 tgctctaggaattctgcctcgaaattcca 3481369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 15767567 - 15767441
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  15767567 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 15767470  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  15767469 tgctctaggaattctgcctcgaaattcca 15767441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 20095162 - 20095036
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  20095162 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 20095065  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  20095064 tgctctaggaattctgcctcgaaattcca 20095036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 3673929 - 3674051
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||| | |  ||||||||||||| |||| || |||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||    
T  3673929 ctatctcagacagagaacccacacacaaaccttttcataaggtgtattctaaaaacccgtgcgttttatggccttgcacgtctatcccggttttaacgaa 3674028  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     |||||||| ||| |||| ||||    
T  3674029 cgctctaggtattttgccccgaa 3674051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 930 - 1051
Target Start/End: Complemental strand, 23664927 - 23664805
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || |||||||||||||||| ||||||||||| |||| ||||||| |||||| |||||||||||    
T  23664927 ctatctcagacatagaacccacacacaaaccttttcctaaggtgtattctaaaagctcgtgcgttttatggccctgcacgtctatcccagttttaacgaa 23664828  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     | |||||| |||||||| ||||    
T  23664827 cgttctaggtattctgccccgaa 23664805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 18468502 - 18468624
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggt-gtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||  |  ||||||||||||| |||| || || ||||||||||||| ||||||||||| |||| ||||||| |||||||||||| |||||    
T  18468502 ctatctcagacatggaacccacacacaaaccttttcctaagttgtattctaaaagctcgtgcgttttatggccttgcacgtctatcccggtttttacgaa 18468601  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
    || |||||| |||||||| ||||    
T  18468602 tgttctaggtattctgccccgaa 18468624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 715 - 859
Target Start/End: Complemental strand, 20811152 - 20810995
Alignment:
Q  715 taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggtagtcatcccaactagaaagtgtttatatacgggaagagtgac------------ 802  Q
    ||||||||||||||  ||||||||||||||||||||||||||||  |  ||   |||||| ||||||||||||||  || ||||||||                
T  20811152 taagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtaaaccacatcaactaaaaagtgtttatataaaggtagagtgacttccaagatgtg 20811053  T
Q  803 -cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatcac 859  Q
     ||||||||||||||||| || || |||||||||||||||||||||||||||||||||    
T  20811052 tcccttggggtacccactcttttgcacgggtgaacgcttacaaaaacatatatatcac 20810995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 611 - 662
Target Start/End: Original strand, 26162503 - 26162554
Alignment:
Q  611 tttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26162503 tttgcatcaaatttcaatcacccatcctcttttccaaacaactttaatccat 26162554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 6045304 - 6045358
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  6045304 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 6045358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 10424628 - 10424682
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  10424628 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 10424682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 20521250 - 20521371
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  || |||||||| | |||| || ||| || ||||||||| ||||||||||  |||||||||||| |||||| |||||| ||||    
T  20521250 ctatctcagacatagaacccgcacacaaatcttttcctaaggtataatctaaaagctcgtgcgttttt-ggccatgcacgtctatcccagttttagcgaa 20521348  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
    ||||||||| |||||||| ||||    
T  20521349 tgctctaggtattctgccccgaa 20521371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 35472249 - 35472303
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    ||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  35472249 ggttttgcatcaaattttaatcacccatcctcttttccaaaccactttaatccat 35472303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 43475557 - 43475503
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||    
T  43475557 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatccat 43475503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 610 - 662
Target Start/End: Original strand, 49027382 - 49027434
Alignment:
Q  610 ttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||||||||    
T  49027382 ttttgcatcaaatttcaatcacctatcctctgttccaaacaactttaatccat 49027434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 8884534 - 8884655
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||| | |||| || |||||||||||||| | ||||  ||| | |||| ||||||| ||||||||||||||||||    
T  8884534 ctatctcagacatagaacccacacacaaatcttttcataaggtgtattctaaaaactcgtgtattt-atggccttgcacgtctatcccggttttaacgaa 8884632  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     |||||||| ||| |||| ||||    
T  8884633 cgctctaggtattttgccccgaa 8884655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 30415432 - 30415486
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  30415432 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 30415486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 931 - 1046
Target Start/End: Complemental strand, 12970613 - 12970498
Alignment:
Q  931 tatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    ||||||||||||| |  ||||||||||||  |||| || ||||||||||||||||| ||  |||| | |||| |||| || |||||| |||||||||||     
T  12970613 tatctcagacatagaacccacacacaaacattttcctaaggtgtattctaaaagcctgtctgttt-atggccctgcatgtctatcccagttttaacgaac 12970515  T
Q  1030 gctctaggaattctgcc 1046  Q
    |||||||| ||||||||    
T  12970514 gctctaggtattctgcc 12970498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 731 - 803
Target Start/End: Complemental strand, 26962748 - 26962676
Alignment:
Q  731 tgtgtgacttaaaaatgtcccacattgggtagtcatcccaactagaaagtgtttatatacgggaagagtgacc 803  Q
    ||||||||||||||| ||| ||||||||  || ||  |||||||||||||||||||||| ||| |||||||||    
T  26962748 tgtgtgacttaaaaaagtctcacattggtgagccacaccaactagaaagtgtttatataagggtagagtgacc 26962676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 617 - 659
Target Start/End: Complemental strand, 42564068 - 42564026
Alignment:
Q  617 tcaaatttcaatcatccatcctcttttccaaacaactttaatc 659  Q
    |||||||||||||| ||||||||| ||||||||||||||||||    
T  42564068 tcaaatttcaatcacccatcctctgttccaaacaactttaatc 42564026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 731 - 803
Target Start/End: Complemental strand, 11777298 - 11777226
Alignment:
Q  731 tgtgtgacttaaaaatgtcccacattgggtagtcatcccaactagaaagtgtttatatacgggaagagtgacc 803  Q
    ||||||||||||||||||||||||||||  || ||  | |||||| ||||||||||||| ||| || ||||||    
T  11777298 tgtgtgacttaaaaatgtcccacattggtgagccacactaactagcaagtgtttatataagggtagggtgacc 11777226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 4874079 - 4874133
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| ||||||||||||||  |||||||| ||| |||||||||| ||||||    
T  4874079 ggttttgcctcaaatttcaatcactcatcctctgttctaaacaacttttatccat 4874133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 33188040 - 33188094
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| ||||||||||||||  | |||||| |||||||||||||| ||||||    
T  33188040 ggttttgcctcaaatttcaatcactcttcctctgttccaaacaacttttatccat 33188094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 806 - 859
Target Start/End: Complemental strand, 26707490 - 26707437
Alignment:
Q  806 ttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatcac 859  Q
    |||||||||| |||||||  ||||||||| ||||||| |||| |||||||||||    
T  26707490 ttggggtaccaacttttgcaaacgggtgagcgcttacgaaaatatatatatcac 26707437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 803 - 856
Target Start/End: Complemental strand, 26929351 - 26929298
Alignment:
Q  803 cccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatat 856  Q
    ||||||||||||||||||||| |||||||| | |||||| ||||| ||| ||||    
T  26929351 cccttggggtacccacttttgcgaacgggtaagcgcttagaaaaatataaatat 26929298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 1e-44; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 662 - 885
Target Start/End: Complemental strand, 42915356 - 42915118
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||||||||  ||||||||||||||||||||||||||||      
T  42915356 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 42915258  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||||||||||||||||||||| ||| |||||||||             ||||||||||||||||||||||||||||||||||||| |||||     
T  42915257 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttgcaaaag 42915158  T
Q  848 catatatatcac--gcgcgacgacgccgccgtctgaccga 885  Q
     |||||||||||  ||||||||||||||||||| ||||||    
T  42915157 tatatatatcacatgcgcgacgacgccgccgtccgaccga 42915118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 30652204 - 30652326
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || |||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||||||||    
T  30652204 ctatctcagacatagaacccacacacaaaccttttcctaaggtgtattctaaaagctcgtgcgttttatggccctgcacgtctatcccggttttaacgaa 30652303  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     | |||||| |||||||| ||||    
T  30652304 cgttctaggtattctgccccgaa 30652326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 44759148 - 44759022
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  44759148 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 44759051  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  44759050 tgctctaggaattctgcctcgaaattcca 44759022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 930 - 1051
Target Start/End: Complemental strand, 9184223 - 9184101
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || |||||||||||||||| ||||||||||| |||  ||||||| ||||||||||||||||||    
T  9184223 ctatctcagacatagaacccacacacaaaccttttcctaaggtgtattctaaaagctcgtgcgttttatggctctgcacgtctatcccggttttaacgaa 9184124  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     | |||||| |||||||| ||||    
T  9184123 cgttctaggtattctgccccgaa 9184101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 930 - 1045
Target Start/End: Complemental strand, 17974156 - 17974040
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||| ||| |||| || |||||||||||||||| ||||||||||| |||| ||||||| |||||| |||||||||||    
T  17974156 ctatctcagacatagaatccacacacataccttttcctaaggtgtattctaaaagctcgtgcgttttatggccctgcacgtctatcccagttttaacgaa 17974057  T
Q  1029 tgctctaggaattctgc 1045  Q
     | |||||| |||||||    
T  17974056 cgttctaggtattctgc 17974040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 42727996 - 42727870
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||| | |||||| |||||||||||    
T  42727996 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacatctatcccagttttaacgaa 42727899  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||| ||||||||||||||||||||    
T  42727898 tgctctagaaattctgcctcgaaattcca 42727870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 930 - 1051
Target Start/End: Complemental strand, 44630292 - 44630171
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||| ||||||| |  ||||||||||||| |||| || ||||| |||||||||||||||||||| | |||| ||||||| |||| | |||||||||||    
T  44630292 ctatcttagacatagaacccacacacaaaccatttcctaaggtgtgttctaaaagcccgtgcgttt-atggccctgcacgtctatctcagttttaacgaa 44630194  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     |||||||| |||||||||||||    
T  44630193 cgctctaggtattctgcctcgaa 44630171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 662 - 859
Target Start/End: Complemental strand, 5089872 - 5089661
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaa-tgtcccacattggg 759  Q
    ||||| |||||||||| ||| |||||||||| |||||| |||| || ||| |  ||||||||||||||  || | |||||||||| |||||||||||||     
T  5089872 tgttgaaacactagttgaatttagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgcgggacttaaaaaatgtcccacattggt 5089774  T
Q  760 tagtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 846  Q
     || ||  |||| ||||||||||||||||| ||  |||||||||             |||||  ||||||||||||||||||||||||||||||||||||    
T  5089773 gagccacaccaattagaaagtgtttatataaggatagagtgacctctaagggtgtgcccttgatgtacccacttttgtgaacgggtgaacgcttacaaaa 5089674  T
Q  847 acatatatatcac 859  Q
    | |||||||||||    
T  5089673 atatatatatcac 5089661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 27557398 - 27557526
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctt--aggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacga 1027  Q
    ||||||||||||||||  |  |||||||| | |||| |  |||||| ||||||||||||||| |||| | |||| ||||||| |||||| ||||||||||    
T  27557398 ctatctcagacataaaatctgcacacaaagcttttccttaaggtgttttctaaaagcccgtgtgttt-atggccctgcacgtctatcccagttttaacga 27557496  T
Q  1028 atgctctaggaattctgcctcgaaattcca 1057  Q
    | |||| || ||||||||||||||||||||    
T  27557497 acgctcgagaaattctgcctcgaaattcca 27557526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 608 - 661
Target Start/End: Complemental strand, 6363531 - 6363478
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatcca 661  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  6363531 ggttttgcatcaaatttcaatcacccatcctctgttccaaacaactttaatcca 6363478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 4279234 - 4279180
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||||||||||||||||||  |||||||| |||||||||||||||||||||    
T  4279234 ggttttgcatcaaatttcaatcactcatcctctgttccaaacaactttaatccat 4279180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 930 - 1046
Target Start/End: Complemental strand, 25483579 - 25483463
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  || |||||||||| |||| || |||||||||||||||| |||| |||| | |||||||||||| ||||||   |||||||||    
T  25483579 ctatctcagacatagaacccgcacacaaaccttttcctaaggtgtattctaaaagctcgtgtgttt-atggccatgcacgtctatcccatatttaacgaa 25483481  T
Q  1029 tgctctaggaattctgcc 1046  Q
     |||||||| ||||||||    
T  25483480 cgctctaggtattctgcc 25483463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 930 - 1046
Target Start/End: Complemental strand, 25491185 - 25491069
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  || |||||||||| |||| || |||||||||||||||| |||| |||| | |||||||||||| ||||||   |||||||||    
T  25491185 ctatctcagacatagaacccgcacacaaaccttttcctaaggtgtattctaaaagctcgtgtgttt-atggccatgcacgtctatcccatatttaacgaa 25491087  T
Q  1029 tgctctaggaattctgcc 1046  Q
     |||||||| ||||||||    
T  25491086 cgctctaggtattctgcc 25491069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 7585505 - 7585559
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  7585505 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 7585559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 7763144 - 7763198
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||| |||||||||| ||||| ||||||| | |||||||||||||||||||||    
T  7763144 ggttttacatcaaattttaatcacccatcctttgttccaaacaactttaatccat 7763198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 804 - 856
Target Start/End: Complemental strand, 39959811 - 39959759
Alignment:
Q  804 ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatat 856  Q
    ||||||||||||| |||||| ||||||||||||||||| ||| | ||||||||    
T  39959811 ccttggggtacccgcttttgcgaacgggtgaacgcttagaaatatatatatat 39959759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 88; Significance: 9e-42; HSPs: 3)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 2569 - 2695
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||||||||||||||| |||||||||||    
T  2569 ctatctcagacatagaatccacacacaaaccctttcttaggtgtattctaaaagcatgtgtgttt-aaggccatgcacgtgtatcccgattttaacgaat 2667  T
Q  1030 gctctaggaattctgcctcgaaattcca 1057  Q
    ||||||| ||||||||||||||||||||    
T  2668 gctctagaaattctgcctcgaaattcca 2695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 662 - 864
Target Start/End: Complemental strand, 2420 - 2204
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactactaa-gaactagtgtggttgtgtgacttaaaaa-tgtcccacattggg 759  Q
    |||||||||||||||| || ||||||||||| |||||| |||| || ||| |  || |||||||||||  ||||||||||||||| |||||||||||||     
T  2420 tgttggaacactagttgaacctagtgagaaaattggataagaaaaa-cacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacattggt 2322  T
Q  760 tagtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 846  Q
     || ||  |||||||||||||||||||||| ||| |  ||||||             ||||||||||||||||||||||||||| |||||||||||||||    
T  2321 gagccacaccaactagaaagtgtttatataagggtattgtgacctccaagggtgtgcccttggggtacccacttttgtgaacggatgaacgcttacaaaa 2222  T
Q  847 acatatatatcacgcgcg 864  Q
    ||||||||||||||||||    
T  2221 acatatatatcacgcgcg 2204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 662 - 803
Target Start/End: Complemental strand, 7674 - 7532
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactactaa-gaactagtgtggttgtgtgacttaaaaa-tgtcccacattggg 759  Q
    |||||||||||||||| || ||||||||||| |||||| |||| || ||| |  || |||||||||||  ||||||||||||||| |||||||||||||     
T  7674 tgttggaacactagttgaacctagtgagaaaattggataagaaaaa-cacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacattggt 7576  T
Q  760 tagtcatcccaactagaaagtgtttatatacgggaagagtgacc 803  Q
     || ||  |||||||||||||||||||||| ||| || ||||||    
T  7575 gagccacaccaactagaaagtgtttatataagggtagtgtgacc 7532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 662 - 891
Target Start/End: Original strand, 28291842 - 28292083
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||| | ||||| |||||| |||| ||  || || ||||||||||||||   ||||||||||||||||||||| |||||      
T  28291842 tgttggaacactagttaaatctaattagaaaattggataagaaaaacacaata-taagaactagtgtgagcgtgtgacttaaaaatgtcccatattggtg 28291940  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    ||  |  |||||||||||||||||||||| ||| | |||||||             ||||||||||||||||||||||||||||||||||||||||||||    
T  28291941 agctacaccaactagaaagtgtttatataagggtatagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 28292040  T
Q  848 catatatatcacgcgcgacgacgccgccgtctgaccgaaccggg 891  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||    
T  28292041 catatatatcacacgcg-cgacgccgccgtccgaccgaaccggg 28292083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 662 - 884
Target Start/End: Complemental strand, 24529183 - 24528946
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagc-actactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||   | || ||||||||||||||  |||||||||||||||| ||| |||||||      
T  24529183 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacataata-taagaactagtgtgagtgtgtgacttaaaaatatcctacattggtg 24529085  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacccc-------------ttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||||||||||||||||||||| ||| ||||||||| |             ||||||||||||||||| ||||||| ||||||||| ||||||    
T  24529084 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcctttggggtacccacttttatgaacggatgaacgcttgcaaaaa 24528985  T
Q  848 catatatat--cacgcgcgacgacgccgccgtctgaccg 884  Q
    |||||||||  |||||||||||||||||||||| |||||    
T  24528984 catatatatcacacgcgcgacgacgccgccgtccgaccg 24528946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 662 - 852
Target Start/End: Complemental strand, 33227113 - 33226916
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| || | || ||| |  ||||||||||||||  |||||||||||||||||| |||||||||      
T  33227113 tgttggaacactagttaaatctagtgagaaaattggataaggaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacattggtg 33227014  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-ccttg-gggtac----ccacttttgtgaacgggtgaacgcttacaaaaacatat 852  Q
    |||||  |||||||||||||||||||||| ||| ||||||||| ||  | | || |    ||||||||||||||||||||||||||||||||||||||    
T  33227013 agtcacaccaactagaaagtgtttatataagggtagagtgacctccaagagtgtgcccttccacttttgtgaacgggtgaacgcttacaaaaacatat 33226916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 662 - 856
Target Start/End: Complemental strand, 7358127 - 7357920
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||  ||||||| |||||| |||| ||  || | | |||||||||||||   ||||||||||||||||||||| |||||      
T  7358127 tgttggaacactagttgaatcttttgagaaaattggataagaaaaacacaatgc-aagaactagtgtgagcgtgtgacttaaaaatgtcccatattggtg 7358029  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc-------------ccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 847  Q
    || ||  |||| ||||||||||||||||| ||| |||||||||             ||||| ||||||||||||||||||||||||||||||||||||||    
T  7358028 agccacaccaattagaaagtgtttatataagggtagagtgacctccaaggatgtgcccttgaggtacccacttttgtgaacgggtgaacgcttacaaaaa 7357929  T
Q  848 catatatat 856  Q
    |||||||||    
T  7357928 catatatat 7357920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 33238722 - 33238848
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  33238722 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 33238819  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  33238820 tgctctaggaattctgcctcgaaattcca 33238848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 47994519 - 47994645
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  47994519 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 47994616  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  47994617 tgctctaggaattctgcctcgaaattcca 47994645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 662 - 803
Target Start/End: Complemental strand, 9974062 - 9973921
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| || ||| |  ||||||||| ||||  ||||||||||||||||||||||||||||      
T  9974062 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactaatgtgagtgtgtgacttaaaaatgtcccacattggtg 9973964  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc 803  Q
    || ||  ||||||||||| |||| ||||| ||| |||||||||    
T  9973963 agccacaccaactagaaattgttaatataagggtagagtgacc 9973921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 32749060 - 32749006
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32749060 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 32749006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 957 - 1055
Target Start/End: Complemental strand, 7018361 - 7018264
Alignment:
Q  957 aaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaatgctctaggaattctgcctcgaaattc 1055  Q
    |||| ||||| ||||||||||||||||||||||| ||| | |||| ||||||| |||||| ||||||||||| ||||||| ||||||||||| ||||||    
T  7018361 aaccttttctaaggtgtattctaaaagcccgtgcattt-atggccctgcacgtctatcccagttttaacgaacgctctagaaattctgcctcaaaattc 7018264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 957 - 1055
Target Start/End: Complemental strand, 7033719 - 7033622
Alignment:
Q  957 aaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaatgctctaggaattctgcctcgaaattc 1055  Q
    |||| ||||| ||||||||||||||||||||||| ||| | |||| ||||||| |||||| ||||||||||| ||||||| ||||||||||| ||||||    
T  7033719 aaccttttctaaggtgtattctaaaagcccgtgcattt-atggccctgcacgtctatcccagttttaacgaacgctctagaaattctgcctcaaaattc 7033622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 40690432 - 40690378
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40690432 ggttttgcatcaaatttcaatcacccatcctcttttccaaacaactttaatccat 40690378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 611 - 662
Target Start/End: Complemental strand, 26815229 - 26815178
Alignment:
Q  611 tttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26815229 tttgcatcaaatttcaatcacccatcctcttttccaaacaactttaatccat 26815178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 611 - 662
Target Start/End: Original strand, 32127218 - 32127269
Alignment:
Q  611 tttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32127218 tttgcatcaaatttcaatcacccatcctcttttccaaacaactttaatccat 32127269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 22660014 - 22659960
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  22660014 ggttttgcttcaaatttcaatcatccatcctctgttccaaacaactttaatccat 22659960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 948 - 1057
Target Start/End: Original strand, 17496419 - 17496526
Alignment:
Q  948 ccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaatgctctaggaattctgcct 1047  Q
    |||||||||| || ||||| |||||| ||||||||||| |||||||  | |||| ||||||| |||||| ||||||||||||||||||| ||||||||||    
T  17496419 ccacacacaa-ccttttctgaggtgttttctaaaagcctgtgcgtta-atggccttgcacgtctatcccagttttaacgaatgctctagaaattctgcct 17496516  T
Q  1048 cgaaattcca 1057  Q
    |  |||||||    
T  17496517 cagaattcca 17496526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 948 - 1057
Target Start/End: Complemental strand, 17556795 - 17556688
Alignment:
Q  948 ccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaatgctctaggaattctgcct 1047  Q
    |||||||||| || ||||| |||||| ||||||||||| |||||||  | |||| ||||||| |||||| ||||||||||||||||||| ||||||||||    
T  17556795 ccacacacaa-ccttttctgaggtgttttctaaaagcctgtgcgtta-atggccttgcacgtctatcccagttttaacgaatgctctagaaattctgcct 17556698  T
Q  1048 cgaaattcca 1057  Q
    |  |||||||    
T  17556697 cagaattcca 17556688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 608 - 660
Target Start/End: Complemental strand, 42881702 - 42881650
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatcc 660  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  42881702 ggttttgcctcaaatttcaatcacccatcctctgttccaaacaactttaatcc 42881650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 36521596 - 36521542
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||    
T  36521596 ggttttgcctcaaatttcaatcacccatcctttgttccaaacaactttaatccat 36521542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 968 - 1051
Target Start/End: Original strand, 2596099 - 2596181
Alignment:
Q  968 aggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaatgctctaggaattctgcctcgaa 1051  Q
    |||||||||||||||||| ||| |||| | || ||||||||| |||||| ||||||||||| ||| |||| |||||||| ||||    
T  2596099 aggtgtattctaaaagcctgtgtgttt-atggtcatgcacgtttatcccagttttaacgaacgctataggtattctgccccgaa 2596181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 930 - 1051
Target Start/End: Original strand, 12802571 - 12802692
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| || ||| || ||||||||||| || |||||  |||| | ||||| |||||  |||||||||||    
T  12802571 ctatctcagacatagaacccacacacaaaccttttcataaggtataatctaaaagcccatgtgttttt-ggccctacacgtctatccaagttttaacgaa 12802669  T
Q  1029 tgctctaggaattctgcctcgaa 1051  Q
     |||||||| |||||||| ||||    
T  12802670 cgctctaggtattctgccccgaa 12802692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 40300874 - 40300928
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||| | |||||||||||||| | ||||||| |||||||||||||||||||||    
T  40300874 ggttttacctcaaatttcaatcacctatcctctgttccaaacaactttaatccat 40300928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 662 - 704
Target Start/End: Complemental strand, 10437456 - 10437414
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaa 704  Q
    |||||||||||||||| |||||||||||||| |||||| ||||    
T  10437456 tgttggaacactagttgaatctagtgagaaaattggataagaa 10437414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 662 - 704
Target Start/End: Complemental strand, 10451166 - 10451124
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaa 704  Q
    |||||||||||||||| |||||||||||||| |||||| ||||    
T  10451166 tgttggaacactagttgaatctagtgagaaaattggataagaa 10451124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 18289 - 18163
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  18289 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 18192  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  18191 tgctctaggaattctgcctcgaaattcca 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 27092 - 27218
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaa-gcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    ||||||||||||||    |||||||||| || |||||||||||| |||||||| |||||||||||  | |||| ||||||| |||||| |||||||||||    
T  27092 ctatctcagacataggacccacacacaa-ccttttcttaggtgttttctaaaaagcccgtgcgtta-atggccttgcacgtctatcccagttttaacgaa 27189  T
Q  1029 tgctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||||||||||||||||||    
T  27190 tgctctaggaattctgcctcgaaattcca 27218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 662 - 803
Target Start/End: Original strand, 2421 - 2562
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  |||||||||||||||||||||||||||       
T  2421 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattgttg 2519  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc 803  Q
    || ||  ||||||||||||| |||||||| ||| |||||||||    
T  2520 agccacaccaactagaaagtatttatataagggtagagtgacc 2562  T

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Target: scaffold0132; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 662 - 803
Target Start/End: Original strand, 10381 - 10522
Alignment:
Q  662 tgttggaacactagttcaatctagtgagaaatttggatgagaataag-cactactaagaactagtgtggttgtgtgacttaaaaatgtcccacattgggt 760  Q
    |||||||||||||||| |||||||||||||| |||||| |||| ||  || || ||||||||||||||  |||||||||||||||||||||||||||       
T  10381 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaata-taagaactagtgtgagtgtgtgacttaaaaatgtcccacattgttg 10479  T
Q  761 agtcatcccaactagaaagtgtttatatacgggaagagtgacc 803  Q
    || ||  ||||||||||||| |||||||| ||| |||||||||    
T  10480 agccacaccaactagaaagtatttatataagggtagagtgacc 10522  T

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Target: scaffold0061 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 48689 - 48561
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctt--aggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacga 1027  Q
    |||||||||||||| |  || |||||||||| |||| |  |||||||||||| ||||||||| |||| | |||| |||||||||||||| ||||||||||    
T  48689 ctatctcagacatagaacccgcacacaaaccatttccttaaggtgtattctataagcccgtgtgttt-atggccttgcacgtgtatcccagttttaacga 48591  T
Q  1028 atgctctaggaattctgcctcgaaattcca 1057  Q
    | ||||||||||||||||||| ||||||||    
T  48590 acgctctaggaattctgcctctaaattcca 48561  T

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Target: scaffold0017 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 149944 - 150072
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctt--aggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacga 1027  Q
    |||||||||||||| |  || |||||||||| |||| |  |||||||||||| ||||||||| |||| | |||| |||||||||||||| ||||||||||    
T  149944 ctatctcagacatagaacccgcacacaaaccatttccttaaggtgtattctataagcccgtgtgttt-atggccttgcacgtgtatcccagttttaacga 150042  T
Q  1028 atgctctaggaattctgcctcgaaattcca 1057  Q
    | ||||||||||||||||||| ||||||||    
T  150043 acgctctaggaattctgcctctaaattcca 150072  T

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Target: scaffold0067 (Bit Score: 56; Significance: 1e-22; HSPs: 3)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 33160 - 33034
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttcttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaat 1029  Q
    |||||||||||||| |  ||||||||||| | ||||||||||||||||||||||  |||||  |||| |||| ||||||| |||  |||||||||||||     
T  33160 ctatctcagacatagaatccacacacaaatcttttcttaggtgtattctaaaagtacgtgc-atttatggccctgcacgtctatttcggttttaacgaac 33062  T
Q  1030 gctctaggaattctgcctcgaaattcca 1057  Q
    |||||||||||||| |||||| ||||||    
T  33061 gctctaggaattcttcctcgagattcca 33034  T

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Target: scaffold0067; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 806 - 875
Target Start/End: Original strand, 33456 - 33527
Alignment:
Q  806 ttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatca--cgcgcgacgacgccgcc 875  Q
    ||||| ||||||||||||||||||||||| |||||| ||||| ||||||||||  ||| |||||||||||||    
T  33456 ttgggatacccacttttgtgaacgggtgagcgcttagaaaaatatatatatcatgcgctcgacgacgccgcc 33527  T

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Target: scaffold0067; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 731 - 789
Target Start/End: Original strand, 33368 - 33426
Alignment:
Q  731 tgtgtgacttaaaaatgtcccacattgggtagtcatcccaactagaaagtgtttatata 789  Q
    |||||||||||||||||||||||||||   || ||  |||||||| |||||||||||||    
T  33368 tgtgtgacttaaaaatgtcccacattgatgagccacaccaactagcaagtgtttatata 33426  T

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Target: scaffold0015 (Bit Score: 55; Significance: 5e-22; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 213102 - 212974
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctt--aggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacga 1027  Q
    |||||||||||||| |  || |||||||||| |||| |  | |||||||||| |||||||||||||| | |||| | ||||| |||||| ||||||||||    
T  213102 ctatctcagacatagaacccgcacacaaaccttttccttaaagtgtattctataagcccgtgcgttt-atggccctacacgtctatcccagttttaacga 213004  T
Q  1028 atgctctaggaattctgcctcgaaattcca 1057  Q
    | ||||||||||||||||||||||||||||    
T  213003 acgctctaggaattctgcctcgaaattcca 212974  T

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Target: scaffold0060 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 930 - 1057
Target Start/End: Complemental strand, 51644 - 51516
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttctt--aggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacga 1027  Q
    |||||||||||||| |  || |||||||||| |||| |  |||||||||||| |||||||| ||||| | |||| |||||||||||||| ||||||||||    
T  51644 ctatctcagacatagaacccgcacacaaaccttttccttaaggtgtattctataagcccgttcgttt-atggccttgcacgtgtatcccagttttaacga 51546  T
Q  1028 atgctctaggaattctgcctcgaaattcca 1057  Q
    |  || ||||||||||||||| ||||||||    
T  51545 acactataggaattctgcctctaaattcca 51516  T

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Target: scaffold0004 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 611 - 662
Target Start/End: Complemental strand, 105940 - 105889
Alignment:
Q  611 tttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  105940 tttgcatcaaatttcaatcacccatcctcttttcctaacaactttaatccat 105889  T

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Target: scaffold0021 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 110175 - 110229
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||||||||||||||||||  |||||||| |||||||||||||||||||||    
T  110175 ggttttgcatcaaatttcaatcactcatcctctgttccaaacaactttaatccat 110229  T

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Target: scaffold0070 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 59769 - 59897
Alignment:
Q  930 ctatctcagacataaacaccacacacaaacccttt-ctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacga 1027  Q
    |||||||||||||| |  || |||||||||| ||| |||| ||||||||||| ||||||||| |||| | |||| |||||||||||||| ||||||||||    
T  59769 ctatctcagacatagaacccgcacacaaacctttttcttaaggtgtattctataagcccgtgagttt-atggccttgcacgtgtatcccagttttaacga 59867  T
Q  1028 atgctctaggaattctgcctcgaaattcca 1057  Q
       |||||| |||| |||||| ||||||||    
T  59868 tcactctagaaattttgcctctaaattcca 59897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 930 - 1057
Target Start/End: Original strand, 63971 - 64099
Alignment:
Q  930 ctatctcagacataaacaccacacacaaacccttt-ctta-ggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacga 1027  Q
    |||||||||||||| |  || |||||||||| ||| |||| ||||||||||| ||||||||| |||| | |||| |||||||||||||| ||||||||||    
T  63971 ctatctcagacatagaacccgcacacaaacctttttcttaaggtgtattctataagcccgtgagttt-atggccttgcacgtgtatcccagttttaacga 64069  T
Q  1028 atgctctaggaattctgcctcgaaattcca 1057  Q
       |||||| |||| |||||| ||||||||    
T  64070 tcactctagaaattttgcctctaaattcca 64099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 930 - 1037
Target Start/End: Original strand, 6523 - 6630
Alignment:
Q  930 ctatctcagacataaacaccacacacaaaccctttc-ttaggtgtattctaaaagcccgtgcgttttaaggccatgcacgtgtatcccggttttaacgaa 1028  Q
    |||||||||||||| |  ||||||||||||| |||| | ||||||||||||||| |||||||  |||| |||| ||||||| |||||| |||||||| ||    
T  6523 ctatctcagacatagaacccacacacaaaccttttcataaggtgtattctaaaaacccgtgc-atttatggccctgcacgtatatcccagttttaacaaa 6621  T
Q  1029 tgctctagg 1037  Q
     ||||||||    
T  6622 cgctctagg 6630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1454 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 378 - 324
Alignment:
Q  608 ggttttgcatcaaatttcaatcatccatcctcttttccaaacaactttaatccat 662  Q
    |||||||||| ||||||||||||  |||||||| |||||||||||||||||||||    
T  378 ggttttgcattaaatttcaatcaatcatcctctgttccaaacaactttaatccat 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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