View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12334_high_5 (Length: 256)
Name: NF12334_high_5
Description: NF12334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12334_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 9002442 - 9002677
Alignment:
| Q |
18 |
ccatgttatgcttctccatacttaaggtgtatgattctcaccactaaggtattcaacnnnnnnnnntaattattattcccttccgccttaaccacnnnnn |
117 |
Q |
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| T |
9002442 |
ccatgttctacttctccatacttaaggt--atgattctcaccactaaggtattcaacaaaaaaaataatatattattcccttccgccttaaccacttttt |
9002539 |
T |
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| Q |
118 |
nncccatatcattatcatggtactcacaacaaattttttnnnnnnntcaatattttaatttctctattggtatcatttggtcctttctgtcccacaacac |
217 |
Q |
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| T |
9002540 |
ttcccatatcattattatggtactctcaacaaattttt-aaaaaaatcaatattttaatttctctattggtatcatttggtcctttctgtcccacaacac |
9002638 |
T |
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| Q |
218 |
atatatatagtctgcctttacatactcattccagtacac |
256 |
Q |
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| T |
9002639 |
atatatatagtctgcctttacatactcattccagtacac |
9002677 |
T |
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