View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12334_low_2 (Length: 459)

Name: NF12334_low_2
Description: NF12334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12334_low_2
NF12334_low_2
[»] chr4 (14 HSPs)
chr4 (1-442)||(46428256-46428692)
chr4 (1-185)||(46015894-46016078)
chr4 (1-338)||(46020784-46021109)
chr4 (4-198)||(46027942-46028144)
chr4 (4-133)||(46015351-46015479)
chr4 (4-132)||(46020583-46020710)
chr4 (3-132)||(46303777-46303905)
chr4 (4-132)||(46246223-46246350)
chr4 (270-334)||(46015607-46015672)
chr4 (34-126)||(41074446-41074537)
chr4 (5-132)||(46021257-46021381)
chr4 (268-334)||(46304065-46304130)
chr4 (31-123)||(14320585-14320676)
chr4 (31-123)||(14321753-14321844)
[»] chr8 (4 HSPs)
chr8 (26-132)||(4522907-4523012)
chr8 (6-132)||(4525280-4525403)
chr8 (267-327)||(4525565-4525626)
chr8 (264-329)||(4522771-4522837)
[»] chr1 (7 HSPs)
chr1 (27-132)||(3802180-3802284)
chr1 (31-185)||(50668519-50668681)
chr1 (34-132)||(3802619-3802716)
chr1 (15-127)||(50668040-50668152)
chr1 (8-86)||(3801740-3801818)
chr1 (1-55)||(3804128-3804182)
chr1 (264-320)||(50667472-50667529)
[»] chr3 (1 HSPs)
chr3 (33-112)||(52806350-52806429)
[»] scaffold0384 (1 HSPs)
scaffold0384 (29-115)||(5721-5806)
[»] scaffold0079 (1 HSPs)
scaffold0079 (29-101)||(7947-8018)


Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 46428256 - 46428692
Alignment:
Q  1 ttgggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428256 ttgggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaat 46428355  T
Q  101 gcaagttct---tgattgagtgttaatatggacatgtgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctattattttctat 197  Q
    |||||||||   ||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  46428356 gcaagttctaattgattgagtg--------gacatgtgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctattttttcctat 46428447  T
Q  198 gcatgtcttctatttttctgtggctgttgtgcgttgtcttttttcttctccttttctctttaacagtttcagccatattaaaataacctcacccttcatt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428448 gcatgtcttctatttttctgtggctgttgtgcgttgtcttttttcttctccttttctctttaacagtttcagccatattaaaataacctcacccttcatt 46428547  T
Q  298 tcttaattgatcaaaacattaaacagaatttggtaagaagcttcgtggaaattaccagcagactcctcttttgatgtacaggaaccgaaagggactagtt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428548 tcttaattgatcaaaacattaaacagaatttggtaagaagcttcgtggaaattaccagcagactcctcttttgatgtacaggaaccgaaagggactagtt 46428647  T
Q  398 cagagctataatactatatataatgagaatggcgattgtgttact 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  46428648 cagagctataatactatatataatgagaatggcgattgtgttact 46428692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 46015894 - 46016078
Alignment:
Q  1 ttgggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  46015894 ttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 46015993  T
Q  101 gcaagttcttgattgagtgttaatatggacatgtgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 185  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015994 gcaagttcttgattgagtgttaatatacacatatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 46016078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 46020784 - 46021109
Alignment:
Q  1 ttgggttaacatgtacttcgt---ccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatt------tttgctttcctgtttt 91  Q
    ||||||||||||||||| | |   ||| |||||||||||||| ||||||||||||||||||| |||||||||||||||      |  | |||||||||||    
T  46020784 ttgggttaacatgtactacttgatccatctgttatgatttacgttttgactttaaaactatgtgaagatacaattattcacaaataagttttcctgtttt 46020883  T
Q  92 tatgaaaatgcaagttcttgattgagtgttaatatggacatgtgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctattatt 191  Q
     |||||||| |||||||||||||||||||||| ||| |||| ||| ||||||||| |||||||||| |||||||||||||||||||||||||||          
T  46020884 -atgaaaatccaagttcttgattgagtgttaaaatgcacatatgtctatcttgccgttgttgccagacttgggaaattcagcccatttcattct------ 46020976  T
Q  192 ttctatgcatgtcttctatttttctgtggctgttgtgcgttgtcttttttcttctccttttctctttaacagtttcagccatattaaaataacctcaccc 291  Q
      ||||   | ||| ||||        |||||||||| |||||||||||| ||||   ||||| ||||||| ||||||||||||||||||||||||| ||    
T  46020977 --ctat---tatctcctat--------ggctgttgtgtgttgtctttttttttctttctttctttttaacactttcagccatattaaaataacctca-cc 46021062  T
Q  292 ttcatttcttaattgatcaaaacattaaacagaatttggtaagaagc 338  Q
    ||||||||||| || || |||||||||||||||||||||||||||||    
T  46021063 ttcatttcttatttcataaaaacattaaacagaatttggtaagaagc 46021109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 46027942 - 46028144
Alignment:
Q  4 ggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgca 103  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  46027942 ggttaacatgtacttcgtccatctgttatgatttaaattttgactttaaa-ctatgtgaagatacaattatttttgctttcctgtttttatgaagatgca 46028040  T
Q  104 agttcttgattgagtgttaatatggaca---------tgtgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctattattttc 194  Q
    |||||||| ||||||||||||||| |||         | ||||||| |||| || |||||||  |||| |||||| ||||||||||||||||||||||||    
T  46028041 agttcttgtttgagtgttaatatgcacataagtgggttatgtttattttgctatggttgccatacttgtgaaatttagcccatttcattctattattttc 46028140  T
Q  195 tatg 198  Q
    ||||    
T  46028141 tatg 46028144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 46015351 - 46015479
Alignment:
Q  4 ggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgca 103  Q
    |||||||||| ||||| |||| |||||||||| |||||||||| |||||||| ||| ||||||| |||| || ||| ||||||| |||||||||||||||    
T  46015351 ggttaacatgcacttcatccatctgttatgatgtacattttgagtttaaaaccatgtgaagataaaattcttgttgttttcctg-ttttatgaaaatgca 46015449  T
Q  104 agttcttgattgagtgttaatatggacatg 133  Q
    |  ||||||||||||||||||||| |||||    
T  46015450 acctcttgattgagtgttaatatgcacatg 46015479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 46020583 - 46020710
Alignment:
Q  4 ggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgca 103  Q
    |||||||||| ||||  |||| |||||||||||||| || ||| |||||||| ||| |||||||||||| |||||| |||||| ||||||||||||||||    
T  46020583 ggttaacatgcacttaatccatctgttatgatttaccttatgagtttaaaaccatgtgaagatacaattctttttgttttcct-tttttatgaaaatgca 46020681  T
Q  104 agttcttgattgagtgttaatatggacat 132  Q
    |  ||||||||||||||||||||| ||||    
T  46020682 acctcttgattgagtgttaatatgcacat 46020710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 46303905 - 46303777
Alignment:
Q  3 gggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgc 102  Q
    ||||||||||| | ||| |||| ||||||||||||| |||||||||||||||||||| ||||| |||||| ||| |||||||||  |||||| | |||||    
T  46303905 gggttaacatgcatttcatccatctgttatgatttagattttgactttaaaactatgtgaagacacaattctttatgctttcct-attttattacaatgc 46303807  T
Q  103 aagttcttgattgagtgttaatatggacat 132  Q
    ||| ||||||||  ||||||||||| ||||    
T  46303806 aagctcttgattttgtgttaatatgcacat 46303777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 46246350 - 46246223
Alignment:
Q  4 ggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgca 103  Q
    |||||||||| ||||  |||| |||||||||||||| || | | ||||||||  || |||||||||||| |||||  |||||| ||||||||||||||||    
T  46246350 ggttaacatgcacttaatccatctgttatgatttaccttataagtttaaaaccttgtgaagatacaattcttttttttttcct-tttttatgaaaatgca 46246252  T
Q  104 agttcttgattgagtgttaatatggacat 132  Q
    |  |||||||||| |||||||||| ||||    
T  46246251 acctcttgattgaatgttaatatgcacat 46246223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 46015607 - 46015672
Alignment:
Q  270 ccatattaaaataacctcaccctt-catttcttaattgatcaaaacattaaacagaatttggtaag 334  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||    
T  46015607 ccatattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaag 46015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 41074446 - 41074537
Alignment:
Q  34 atttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatat 126  Q
    ||||| |||||||||||||||| ||| |||||||||||| ||||||||||  || ||||| |||||||| || |||||||| |||||||||||    
T  41074446 atttagattttgactttaaaaccatgtgaagatacaattctttttgctttaatg-ttttaagaaaatgctaggtcttgatttagtgttaatat 41074537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 46021257 - 46021381
Alignment:
Q  5 gttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaa 104  Q
    ||||||||| ||| | |||| ||||||||||||| |||  ||||||||||  ||  ||||| |||||| ||| |||||||||| ||||||  ||||||||    
T  46021257 gttaacatgcactccatccatctgttatgatttagatt--gactttaaaatcatttgaagacacaattctttctgctttcctg-ttttatagaaatgcaa 46021353  T
Q  105 gttcttgattgagtgttaatatggacat 132  Q
      |||||||||| |||||||||| ||||    
T  46021354 cctcttgattgaatgttaatatgcacat 46021381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 46304130 - 46304065
Alignment:
Q  268 agccatattaaaataacctcacccttcatttcttaattgatcaaaacattaaacagaatttggtaag 334  Q
    |||| ||||||||||| |||||||||  ||||||||||||||||||||| || ||||||||| ||||    
T  46304130 agccgtattaaaataatctcacccttg-tttcttaattgatcaaaacataaatcagaatttgctaag 46304065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 14320585 - 14320676
Alignment:
Q  31 atgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaa 123  Q
    |||||||| || || ||| || ||| ||| ||||||||||||  ||||||||||||| |||||||| |||||||  || ||||||| ||||||    
T  14320585 atgatttagatattaactgtagaaccatgtgaagatacaattcattttgctttcctg-ttttatgagaatgcaatctcatgattgattgttaa 14320676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 14321753 - 14321844
Alignment:
Q  31 atgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaa 123  Q
    |||||||| || || ||| || ||| ||| ||||||||||||  ||||||||||||| ||| ||||||||||||  || ||||||| ||||||    
T  14321753 atgatttagatattaactgtagaaccatgggaagatacaattcattttgctttcctg-tttcatgaaaatgcaatctcatgattgattgttaa 14321844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 4523012 - 4522907
Alignment:
Q  26 ctgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaata 125  Q
    ||||||||||||| |||||||||||||||| ||| ||||| |||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||| |    
T  4523012 ctgttatgatttagattttgactttaaaaccatgtgaagacacaattctttttgctttcctg-ttttatgaaaattcaagctcttgattgagtgttaaaa 4522914  T
Q  126 tggacat 132  Q
    || ||||    
T  4522913 tgcacat 4522907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 4525403 - 4525280
Alignment:
Q  6 ttaacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaag 105  Q
    |||| ||| ||||| |||| |||||||||| ||  ||||||||||||||| ||| |||||  ||||| ||||||||||| |||||| |||||||  ||||    
T  4525403 ttaaaatgcacttcatccatctgttatgatctaggttttgactttaaaaccatgtgaaga--caattctttttgctttcttgtttt-atgaaaaatcaag 4525307  T
Q  106 ttcttgattgagtgttaatatggacat 132  Q
     ||||||||||||||||||||| ||||    
T  4525306 ctcttgattgagtgttaatatgcacat 4525280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 4525626 - 4525565
Alignment:
Q  267 cagccatattaaaataacctcaccctt-catttcttaattgatcaaaacattaaacagaatt 327  Q
    |||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  4525626 cagccatattaaaacaacctcaccctttcatttcttatttgataaaaacattaaacagaatt 4525565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 329
Target Start/End: Complemental strand, 4522837 - 4522771
Alignment:
Q  264 tttcagccatattaaaataacctcacccttca-tttcttaattgatcaaaacattaaacagaatttg 329  Q
    ||||| |||||||||||| | |||||||||   ||||||| |||||||||| |||||||||||||||    
T  4522837 tttcatccatattaaaatgatctcacccttttgtttcttatttgatcaaaatattaaacagaatttg 4522771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 3802284 - 3802180
Alignment:
Q  27 tgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatat 126  Q
    |||||||||||| |||| ||||||||||| ||| |||| |||||||| ||||||||||||  |||||||||||| |||  ||||| ||||||||||||||    
T  3802284 tgttatgatttagatttcgactttaaaaccatgtgaagctacaattagttttgctttcct-attttatgaaaatacaacctcttgtttgagtgttaatat 3802186  T
Q  127 ggacat 132  Q
    | ||||    
T  3802185 gcacat 3802180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 185
Target Start/End: Original strand, 50668519 - 50668681
Alignment:
Q  31 atgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatatggac 130  Q
    |||||||| |||||||||||| ||  ||| ||| ||| |||| |||||||||| ||| ||| ||||||||||||| ||||||| ||||||||||||| ||    
T  50668519 atgatttagattttgactttagaagcatgtgaaaatagaattctttttgctttactgcttt-atgaaaatgcaagctcttgatcgagtgttaatatgcac 50668617  T
Q  131 a---------tgtgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 185  Q
    |         | |||||||||||| ||||||| ||| ||||| ||||| |||||||||||||||    
T  50668618 ataagttggttatgtttatcttgctattgttgtcagacttggaaaattgagcccatttcattct 50668681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 3802716 - 3802619
Alignment:
Q  34 atttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatatggacat 132  Q
    ||||| |||||||||||||||  ||| ||||||||||||  ||||| |||||| |||| ||||||||||||  ||||||||||||||||||||| ||||    
T  3802716 atttagattttgactttaaaatcatgtgaagatacaattcgttttgttttcctatttt-atgaaaatgcaacctcttgattgagtgttaatatgcacat 3802619  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 50668040 - 50668152
Alignment:
Q  15 acttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaa-ttatttttgctttcctgtttttatgaaaatgcaagttcttgat 113  Q
    ||||||||||  ||| |||||||| |||||||||||| ||| ||| |||||||||| || |||||||||  |||  |||||||||||||||| |||| ||    
T  50668040 acttcgtccatatgtcatgatttaaattttgactttagaaccatgtgaagatacaatttttttttgcttcactg-ctttatgaaaatgcaagctcttaat 50668138  T
Q  114 tgagtgttaatatg 127  Q
    ||| ||||||||||    
T  50668139 tgaatgttaatatg 50668152  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 3801818 - 3801740
Alignment:
Q  8 aacatgtacttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcct 86  Q
    |||||| | ||| |||| ||||||||||||| |||||||||||||||| ||| ||||| |||||| ||| |||||||||    
T  3801818 aacatgcatttcatccatctgttatgatttagattttgactttaaaaccatgtgaagacacaattctttatgctttcct 3801740  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3804182 - 3804128
Alignment:
Q  1 ttgggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaac 55  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||    
T  3804182 ttgggttaacatgcacttcatccatctgttatgatttaaattttgactttaaaac 3804128  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 50667472 - 50667529
Alignment:
Q  264 tttcagccatattaaaataacctcacccttc-atttcttaattgatcaaaacattaaa 320  Q
    |||||||||| |||||||| ||||||||||  |||||||| |||||||||||| ||||    
T  50667472 tttcagccatgttaaaatatcctcaccctttgatttcttatttgatcaaaacaataaa 50667529  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 52806429 - 52806350
Alignment:
Q  33 gatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttga 112  Q
    |||||| |||||||||||| ||| ||| |||||| ||||| ||||| ||||| |||||||||||| ||| ||| ||||||    
T  52806429 gatttagattttgactttagaacaatgtgaagatgcaattcttttttctttcttgtttttatgaacatggaagctcttga 52806350  T

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Target: scaffold0384 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 5806 - 5721
Alignment:
Q  29 ttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatgcaagttcttgattg 115  Q
    ||||||||||||| ||||||||| |||| || | |||||||||| |||||| |||| || ||||||||||||| ||  |||||||||    
T  5806 ttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaatgaaaactcttgattg 5721  T

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Target: scaffold0079 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 8018 - 7947
Alignment:
Q  29 ttatgatttacattttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaatg 101  Q
    ||||||||||||| ||||||||| |||| || | |||||||||| |||||| |||| || |||||||||||||    
T  8018 ttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaatg 7947  T

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