View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12334_low_3 (Length: 328)
Name: NF12334_low_3
Description: NF12334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12334_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 24916015 - 24915726
Alignment:
| Q |
1 |
tatagggcaaaccattattctagttacattgattctgacattagttactccactatttgtaagtgaccttaactcagcctgtaaacttggtaaaaaatac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24916015 |
tatagggcaaaccattattctagttacattgattctgacattagttactccactatttgtaagtgaccttaactcagcctgtaaactaggtaaaaaatac |
24915916 |
T |
|
| Q |
101 |
tgatgcggctactagaattgaccaaatgacatgttctcagtgaccctttcggaaacaaaagcctcttgttacaaatcattgttatcttcaaacattgatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
24915915 |
tgatgcggctactagaattgaccaaatgacatgttctcagtgaccct---------------------ttacatatcattgttatcttcaaacattgatt |
24915837 |
T |
|
| Q |
201 |
taggtagtctattctaacaacaaagcagttgtttaattagtgaagagaaaatattttatgatctcaatgcacaagcagcacacacgtaaacttgcacaag |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24915836 |
taggtagtctattctaacaacaaagtagttgtttaattagtgaagagaaaatattttatgatctcaatgcacaagcagcacacacgtaaacttgcacaag |
24915737 |
T |
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