View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12335_high_2 (Length: 255)

Name: NF12335_high_2
Description: NF12335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12335_high_2
NF12335_high_2
[»] chr8 (7 HSPs)
chr8 (6-255)||(20380360-20380610)
chr8 (11-230)||(17261291-17261509)
chr8 (48-112)||(16190294-16190358)
chr8 (48-119)||(18719563-18719634)
chr8 (48-115)||(18682291-18682358)
chr8 (48-115)||(18727853-18727920)
chr8 (32-97)||(18784871-18784936)
[»] chr3 (5 HSPs)
chr3 (29-255)||(17255662-17255888)
chr3 (27-142)||(16656810-16656925)
chr3 (32-214)||(17222094-17222276)
chr3 (143-230)||(12960124-12960211)
chr3 (49-155)||(18139567-18139673)
[»] scaffold0334 (1 HSPs)
scaffold0334 (6-210)||(11432-11636)
[»] chr4 (6 HSPs)
chr4 (26-222)||(15141213-15141409)
chr4 (25-164)||(19619154-19619293)
chr4 (50-170)||(19607778-19607898)
chr4 (32-155)||(13001605-13001728)
chr4 (162-242)||(19616989-19617069)
chr4 (49-103)||(13574166-13574220)
[»] scaffold0004 (3 HSPs)
scaffold0004 (6-170)||(28944-29107)
scaffold0004 (28-170)||(587-729)
scaffold0004 (81-170)||(833-922)
[»] chr7 (11 HSPs)
chr7 (26-184)||(13136084-13136242)
chr7 (26-230)||(13650729-13650933)
chr7 (26-160)||(13030221-13030355)
chr7 (41-158)||(333527-333644)
chr7 (32-173)||(21693451-21693592)
chr7 (48-112)||(22576103-22576167)
chr7 (49-103)||(9707899-9707953)
chr7 (57-105)||(14125174-14125222)
chr7 (57-105)||(14428570-14428618)
chr7 (57-105)||(16555153-16555201)
chr7 (57-105)||(16610461-16610509)
[»] scaffold0066 (1 HSPs)
scaffold0066 (6-183)||(58866-59043)
[»] chr2 (6 HSPs)
chr2 (32-214)||(24378967-24379149)
chr2 (26-215)||(24848726-24848915)
chr2 (26-134)||(23236781-23236889)
chr2 (48-170)||(21367204-21367324)
chr2 (27-105)||(18939810-18939888)
chr2 (57-105)||(28709856-28709904)
[»] scaffold0789 (1 HSPs)
scaffold0789 (26-151)||(5282-5407)
[»] scaffold0080 (1 HSPs)
scaffold0080 (26-183)||(22740-22897)
[»] scaffold0435 (1 HSPs)
scaffold0435 (20-170)||(1120-1270)
[»] scaffold0084 (1 HSPs)
scaffold0084 (48-214)||(40231-40397)
[»] chr1 (2 HSPs)
chr1 (6-170)||(36135879-36136043)
chr1 (49-98)||(22462778-22462827)
[»] scaffold0261 (1 HSPs)
scaffold0261 (26-157)||(2899-3030)
[»] chr6 (4 HSPs)
chr6 (21-90)||(18379892-18379961)
chr6 (36-105)||(22804095-22804164)
chr6 (32-98)||(21627085-21627151)
chr6 (11-67)||(20110942-20110998)
[»] scaffold0324 (1 HSPs)
scaffold0324 (40-141)||(1543-1644)
[»] scaffold0120 (2 HSPs)
scaffold0120 (26-98)||(35027-35099)
scaffold0120 (26-98)||(43906-43978)
[»] scaffold0007 (1 HSPs)
scaffold0007 (48-105)||(145091-145148)
[»] scaffold0183 (1 HSPs)
scaffold0183 (32-112)||(978-1058)
[»] scaffold1354 (1 HSPs)
scaffold1354 (58-141)||(1313-1396)
[»] scaffold0175 (1 HSPs)
scaffold0175 (48-215)||(9470-9637)
[»] scaffold0032 (1 HSPs)
scaffold0032 (48-93)||(1973-2018)
[»] scaffold0315 (1 HSPs)
scaffold0315 (29-85)||(19950-20006)
[»] chr5 (1 HSPs)
chr5 (48-105)||(26744516-26744573)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 255
Target Start/End: Complemental strand, 20380610 - 20380360
Alignment:
Q  6 aggagcagagacagttgggaaggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20380610 aggaacagagacagttgggcaggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcaaag 20380511  T
Q  106 actctttctagatttgactcaacacctggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttctgatt-ttttgttagatgaagtg 204  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20380510 gctctttctagatttgactcaacacctggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttctgatttttttgttagatgaagtg 20380411  T
Q  205 ggatgagatgaagattcaattatgtttacaggcacaggttctgctcgttca 255  Q
    ||||||||||||||||||||||  ||||||||| ||||  ||||| |||||    
T  20380410 ggatgagatgaagattcaattaattttacaggctcaggcactgctggttca 20380360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 17261291 - 17261509
Alignment:
Q  11 cagagacagttgggaaggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactct 110  Q
    ||||||||  ||| ||||| |||||||| |||||||   ||||||| |||||||||||||||||||||| || ||||||||||||||||||| || || |    
T  17261291 cagagacatctggtaaggtagttgaggccatttgtacacttggtgcatgttgttgggggctttctaaagcaaattcatcagaagctacctcataggcttt 17261390  T
Q  111 ttctagatttgactcaacacctggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttctgattttttgttagatgaagtgggatga 210  Q
    |||||| |||||| | |||||||| |||||| | ||  |||||||||||||||||||||| || || ||||||||| ||| ||| | ||||| |||||||    
T  17261391 ttctaggtttgac-ccacacctggtaattcaccagaacagtgattgaccagattctctaagacagatgtttctgatgtttggtttgttgaagagggatga 17261489  T
Q  211 gatgaagattcaattatgtt 230  Q
    ||||||||||||||||||||    
T  17261490 gatgaagattcaattatgtt 17261509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 16190294 - 16190358
Alignment:
Q  48 gtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactcttt 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||    
T  16190294 gtttggtgcttgttgttgggggctttctaaagcaacttcatcagaagctacttcagaggctcttt 16190358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 18719634 - 18719563
Alignment:
Q  48 gtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatt 119  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||| || ||||||||||    
T  18719634 gtttggtgcttgttgttgtgagctttctaaagtaactccatcagaagctacttcagaggctttttctagatt 18719563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 18682358 - 18682291
Alignment:
Q  48 gtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttcta 115  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||| || ||||||    
T  18682358 gtttggtgcttgttgttgtgagctttctaaagtaactccatcagaagctacttcagaggctttttcta 18682291  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 18727920 - 18727853
Alignment:
Q  48 gtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttcta 115  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||| || ||||||    
T  18727920 gtttggtgcttgttgttgtgagctttctaaagtaactccatcagaagctacttcagaggctttttcta 18727853  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 18784871 - 18784936
Alignment:
Q  32 ttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagcta 97  Q
    ||||||| |||| || ||||||| | |||||||||||||||||| |   |||||||||||||||||    
T  18784871 ttgaggccatttttaagtttggttcatgttgttgggggctttctgacacaacttcatcagaagcta 18784936  T

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Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 17255888 - 17255662
Alignment:
Q  29 ttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaac 128  Q
    |||||||||| || ||||||||||||| ||||||||||||| ||| ||||||||||||  |||||||||||||| || |||| |||||||||||||||||    
T  17255888 ttgttgaggccatctgtaggtttggtggttgttgttgggggatttataaagtaacttcgccagaagctacctcaaaggctctatctagatttgactcaac 17255789  T
Q  129 acctggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttctgattttttgttagatgaagtgggatgagatgaagattcaattatg 228  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||| | ||||||||  ||| ||||| |||||||||||||||||| |||| ||| |||    
T  17255788 acctggtaattcacctgagtaatgattgaccagattctctaaaactaatgtttctgaagtttggttagttgaagtgggatgagatgatgattaaatgatg 17255689  T
Q  229 tttacaggcacaggttctgctcgttca 255  Q
    ||| ||||| ||||  ||||| |||||    
T  17255688 ttttcaggctcaggcactgctggttca 17255662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 16656925 - 16656810
Alignment:
Q  27 ggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactca 126  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||  ||||||||||    
T  16656925 ggttgttgaggtcatttgtacgtttggtgcttgttgttgggggctttctaaagtaacttcatcataagctacctcagaggctctttctgtatttgactca 16656826  T
Q  127 acacctggaaattcat 142  Q
    || ||||| |||||||    
T  16656825 actcctggtaattcat 16656810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 17222276 - 17222094
Alignment:
Q  32 ttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaacacc 131  Q
    ||||||| ||||||| ||| |||||||||||||||||| |||||||||||| ||||  | ||||||| ||| || || | |||||| ||| ||||  |||    
T  17222276 ttgaggccatttgtatgttaggtgcttgttgttgggggttttctaaagtaatttcactaaaagctacttcataggctttctctagacttgcctcacaacc 17222177  T
Q  132 tggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttctgattttttgttagatgaagtgggatgagatg 214  Q
    ||| |||||| |||||| |||||||||||||||||| |||||||||| |||| |  | | | |||||||| ||||||||||||    
T  17222176 tggtaattcacctgagtggtgattgaccagattctccaaaactgaaggttcttaagtatgggtagatgaattgggatgagatg 17222094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 12960211 - 12960124
Alignment:
Q  143 ctgagtagtgattgaccagattctctaaaactgaagtttctgattttttgttagatgaagtgggatgagatgaagattcaattatgtt 230  Q
    |||||||||||||||||||||||||||||||||  ||||||||  ||| ||||| ||||| |||||||||||| |||||||| |||||    
T  12960211 ctgagtagtgattgaccagattctctaaaactgttgtttctgaagtttggttagttgaagagggatgagatgatgattcaataatgtt 12960124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 18139673 - 18139567
Alignment:
Q  49 tttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaacacctggaaattcatctgagt 148  Q
    ||||||| |||||||||| | |||||||||||||||||| ||||||||||||||| | ||||||||   || |||||||||||||  |||||| | || |    
T  18139673 tttggtgtttgttgttggagactttctaaagtaacttcaccagaagctacctcaggggctctttctgagttggactcaacacctgtcaattcaccagaat 18139574  T
Q  149 agtgatt 155  Q
    |||||||    
T  18139573 agtgatt 18139567  T

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Target: scaffold0334 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 11432 - 11636
Alignment:
Q  6 aggagcagagacagttgggaaggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    |||| |||||| | |||| | |||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11432 aggaacagagatatttggcagggttgttgaggtcatttgtaggtttggttcttgttgttgggggctttctaaagtaacttcaccagaagctacctcagag 11531  T
Q  106 actctttctagatttgactcaacacctggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttctgattttttgttagatgaagtgg 205  Q
     |||||||||||||||||||||||||||| |||||| | || |||||| |||||||||| ||||||| |||  ||||| || ||| ||| ||||||| ||    
T  11532 gctctttctagatttgactcaacacctggtaattcaccagaatagtgactgaccagattttctaaaattgatatttctaatgtttggttggatgaagagg 11631  T
Q  206 gatga 210  Q
    |||||    
T  11632 gatga 11636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 15141213 - 15141409
Alignment:
Q  26 aggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactc 125  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| | |||    
T  15141213 aggttgttgaggccatttgtaagtttggtgcttgttgttgggggctttctaaagtaacttcaccagaagctacttcagaggctctttctagattaggctc 15141312  T
Q  126 aacacctggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttctgattttttgttagatgaagtgggatgagatgaagattca 222  Q
    |  |||||| |||||| ||||||||||||||||||||||||| ||||| || | |||| |  ||| | ||| |||| ||||||||||||| ||||||    
T  15141313 acaacctggtaattcacctgagtagtgattgaccagattctccaaaacagatggttctaaagtttgggtagttgaattgggatgagatgatgattca 15141409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 19619293 - 19619154
Alignment:
Q  25 aaggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgact 124  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||| |||| ||| ||||    
T  19619293 aaggttgttgaggctatttgtaggtttggtgcttgctgttgggggctttctaaagtaacttcatcagaagctacctcataggctctctctacattcgact 19619194  T
Q  125 caacacctggaaattcatctgagtagtgattgaccagatt 164  Q
    |||| ||||| |||||| | || |||||| | ||||||||    
T  19619193 caacgcctggtaattcaccagaatagtgactaaccagatt 19619154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 19607898 - 19607778
Alignment:
Q  50 ttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaacacctggaaattcatctgagta 149  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||| ||| || |||||||||||| || |||||||||||| | |||| |||||||    
T  19607898 ttggtgctggttgttgggggcttgctaaagtaacttcatcagaagctacttcaaaggctctttctagatatggctcaacacctggtagttcacctgagta 19607799  T
Q  150 gtgattgaccagattctctaa 170  Q
    |||| |  |||||||||||||    
T  19607798 gtgactagccagattctctaa 19607778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 13001728 - 13001605
Alignment:
Q  32 ttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaacacc 131  Q
    ||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| || |||||||||| |  ||||  ||    
T  13001728 ttgaggccatttgtaagtttggtgcatgttgttgggggctttctaaagtaacttcatcagaatctacttcagaggctttttctagattaggttcaaatcc 13001629  T
Q  132 tggaaattcatctgagtagtgatt 155  Q
    ||| ||||||| ||| ||||||||    
T  13001628 tggtaattcatatgaatagtgatt 13001605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 19617069 - 19616989
Alignment:
Q  162 attctctaaaactgaagtttctgattttttgttagatgaagtgggatgagatgaagattcaattatgtttacaggcacagg 242  Q
    ||||||||| ||||| ||||||| | ||| ||| ||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  19617069 attctctaagactgatgtttctgttgtttggtttgatgaagagggatgagatgaagattcaattatgttgacaggctcagg 19616989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 13574220 - 13574166
Alignment:
Q  49 tttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcag 103  Q
    ||||||| |||||||| |||||||||||||| |||||| || |||||||||||||    
T  13574220 tttggtgattgttgtttggggctttctaaagcaacttcttctgaagctacctcag 13574166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 170
Target Start/End: Complemental strand, 29107 - 28944
Alignment:
Q  6 aggagcagagacagttgggaaggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    |||| ||||||||  ||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||    
T  29107 aggaacagagacatctggaagggttgttgaggttatttgtacgtttggtgcttgttgttgggggctttctaaagca-cttcatcagaagctccctcagag 29009  T
Q  106 actctttctagatttgactcaacacctggaaattcatctgagtagtgattgaccagattctctaa 170  Q
     ||||||||||| |||||||||||||||| | |||| | |||| ||||  |||||||||||||||    
T  29008 gctctttctagagttgactcaacacctggtagttcaccagagtggtgacagaccagattctctaa 28944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 587 - 729
Alignment:
Q  28 gttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaa 127  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |||||||  |||| |||| |||||| || | | ||| || | |||||    
T  587 gttgttgaggccatttgtacgtttggtgcttgttgttgggggatttctaaagcaacttcactagaaactacttcagaggctttctgtaggttaggctcaa 686  T
Q  128 cacctggaaattcatctgagtagtgattgaccagattctctaa 170  Q
    ||| ||| |||||| | || |||||||||||||||||||||||    
T  687 cacatggtaattcaccagaatagtgattgaccagattctctaa 729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 833 - 922
Alignment:
Q  81 aacttcatcagaagctacctcagagactctttctagatttgactcaacacctggaaattcatctgagtagtgattgaccagattctctaa 170  Q
    |||||||  ||||||||| |||||| || | | ||| || | |||||||| ||| |||||| | || |||||||||||||||||||||||    
T  833 aacttcactagaagctacttcagaggctttctgtaggttaggctcaacacatggtaattcaccagaatagtgattgaccagattctctaa 922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 13136242 - 13136084
Alignment:
Q  26 aggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactc 125  Q
    |||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||| || |||    
T  13136242 aggttgatgaggccatctgtaagtttggtgcttgttgttgggggctttctaaagtaacttaatcagaagctacttcagaggctctttctagatatggctc 13136143  T
Q  126 aacacctggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttctg 184  Q
    ||||||||| | ||||  |||||||||| |  ||||||| ||||| | ||| |||||||    
T  13136142 aacacctggtagttcacttgagtagtgactagccagattatctaatattgaggtttctg 13136084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 230
Target Start/End: Original strand, 13650729 - 13650933
Alignment:
Q  26 aggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactc 125  Q
    |||| |||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| || |||||||||  | ||     
T  13650729 aggtagttgaggccatttgtgcatttggtgcttgttgttgggggctttctaaagtaacttcatcaggagctactttagaggctttttctagatagggctt 13650828  T
Q  126 aacacctggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttctgattttttgttagatgaagtgggatgagatgaagattcaatt 225  Q
    ||||||||| | |||| ||||||||||| |  ||||||||||||| || || ||| || || ||| |||  |||||| | |||||||||| || ||||||    
T  13650829 aacacctggtagttcacctgagtagtgactagccagattctctaagaccgatgttcctaatgtttggttgaatgaagagagatgagatgatgactcaatt 13650928  T
Q  226 atgtt 230  Q
    |||||    
T  13650929 atgtt 13650933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 13030355 - 13030221
Alignment:
Q  26 aggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactc 125  Q
    |||||| |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||  ||||||||| |||||| || |||||||||  | |||    
T  13030355 aggttgatgaggccatttgtaagtttggtgcttgttgttgggggttttctaaagtaacttcactagaagctacttcagaggctttttctagataaggctc 13030256  T
Q  126 aacacctggaaattcatctgagtagtgattgacca 160  Q
    |  |||||| |||||| ||||||||||||||||||    
T  13030255 acaacctggtaattcacctgagtagtgattgacca 13030221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 333527 - 333644
Alignment:
Q  41 tttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaacacctggaaattc 140  Q
    ||||| || |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| | |||||||||| |||    
T  333527 tttgttggcttggtgattggtgttgggggctttctaaagtaacttcatcagaagctacctcagaggctttttctagatttgacaccacacctggaagttc 333626  T
Q  141 atctgagtagtgattgac 158  Q
    |   ||||||||| ||||    
T  333627 actagagtagtgactgac 333644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 21693451 - 21693592
Alignment:
Q  32 ttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctc-agagactctttctagatttgactcaacac 130  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||  || ||| |||  || |||||||||| | ||||||||    
T  21693451 ttgaggctatttgtaagtttggtgcttgttgttgggggctttctacagtaatttcctcagaa-ataactctagaagctttttctagattgggctcaacac 21693549  T
Q  131 ctggaaattcatctgagtagtgattgaccagattctctaaaac 173  Q
    |||| |||||| | ||||||||| ||||||||||||| |||||    
T  21693550 ctggtaattcaccagagtagtgactgaccagattctccaaaac 21693592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 22576167 - 22576103
Alignment:
Q  48 gtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactcttt 112  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||| ||||||    
T  22576167 gtttggtgcttgttgttgggggttttctaaagcaacttcatcagaagctacttcagaggctcttt 22576103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 9707953 - 9707899
Alignment:
Q  49 tttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcag 103  Q
    ||||||| |||||||| |||||||||||||| |||||| || |||||||||||||    
T  9707953 tttggtgattgttgtttggggctttctaaagcaacttcttctgaagctacctcag 9707899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 14125174 - 14125222
Alignment:
Q  57 ttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    ||||||||||||||||||| || ||||||| || |||||||| ||||||    
T  14125174 ttgttgttgggggctttctgaaataacttcttctgaagctacttcagag 14125222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 14428570 - 14428618
Alignment:
Q  57 ttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    ||||||||||||||||||| || ||||||| || |||||||| ||||||    
T  14428570 ttgttgttgggggctttctgaaataacttcttctgaagctacttcagag 14428618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 16555201 - 16555153
Alignment:
Q  57 ttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    ||||||||||||||||||| || ||||||| || |||||||| ||||||    
T  16555201 ttgttgttgggggctttctgaaataacttcttctgaagctacttcagag 16555153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 16610461 - 16610509
Alignment:
Q  57 ttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    ||||||||||||||||||| || ||||||| || |||||||| ||||||    
T  16610461 ttgttgttgggggctttctgaaataacttcttctgaagctacttcagag 16610509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 183
Target Start/End: Complemental strand, 59043 - 58866
Alignment:
Q  6 aggagcagagacagttgggaaggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    |||| ||||||||  |||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||| ||    
T  59043 aggaacagagacatctgggcaggttgttgaggccatttgtacgtttggtgcttgttgttgggggctttctaaagtaacttcactagaagctacttcacag 58944  T
Q  106 actctttctagatttgactcaacacctggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttct 183  Q
     || | | ||| || |  |||||||||||  |||||  |||||||||| |||||||||||||||| || |||||||||    
T  58943 gctttctgtaggttaggttcaacacctggtgattcacatgagtagtgactgaccagattctctaagacagaagtttct 58866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 214
Target Start/End: Original strand, 24378967 - 24379149
Alignment:
Q  32 ttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaacacc 131  Q
    ||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||  ||||||||| | ||||||| | |||||||||  ||||  |||    
T  24378967 ttgaggccatttgtacgttaggtgcttgttgttgggggctttctaaagtaacttcactagaagctactttagagactttctctagatttagctcacaacc 24379066  T
Q  132 tggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttctgattttttgttagatgaagtgggatgagatg 214  Q
    ||| ||||||  | || ||||||||||||||||| | |||||||||| || |||| | | | |||||||  ||||||||||||    
T  24379067 tggtaattcacttaaggagtgattgaccagattccccaaaactgaaggttttgatgtatgggtagatgagttgggatgagatg 24379149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 24848915 - 24848726
Alignment:
Q  26 aggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctc-agagactctttctagatttgact 124  Q
    ||||||||||||  ||||||| |||||||| ||||||||||||||||| |||||||| |||||||| |  || ||| |||| || ||||||| || || |    
T  24848915 aggttgttgaggtcatttgtaagtttggtgtttgttgttgggggctttttaaagtaatttcatcaggaa-taactctagaggctttttctaggttggatt 24848817  T
Q  125 caacacctggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttctgattttttgttagatgaagtgggatgagatga 215  Q
    |||||||||| |||||  ||||||||||||||||||||||||| |||||||| | ||||||  |||   ||| ||||||||||||||||||    
T  24848816 caacacctggtaattcgcctgagtagtgattgaccagattctccaaaactgatggttctgaagtttgagtagttgaagtgggatgagatga 24848726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 23236781 - 23236889
Alignment:
Q  26 aggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactc 125  Q
    ||||||||||||| ||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||||||| |||||| || | | |||||||| |||    
T  23236781 aggttgttgaggccatttgtaagtttcgtgcttgatgttgggggctttctaaggtaacttcatcagaagctacttcagaggctttctgtagatttggctc 23236880  T
Q  126 aacacctgg 134  Q
    |||||||||    
T  23236881 aacacctgg 23236889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 21367204 - 21367324
Alignment:
Q  48 gtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaacacctggaaattcatctgag 147  Q
    ||||||||||||||||| |||||||||||||| |||||||  ||||||||| ||||||   ||||||| ||| | |||||| ||||| | |||| |||||    
T  21367204 gtttggtgcttgttgttcggggctttctaaagcaacttcactagaagctacttcagag--gctttctaaattgggctcaacgcctggtagttcacctgag 21367301  T
Q  148 tagtgattgaccagattctctaa 170  Q
    |||||| | ||||||||||||||    
T  21367302 tagtgactaaccagattctctaa 21367324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 18939810 - 18939888
Alignment:
Q  27 ggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    |||| ||| ||| ||||||  |||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  18939810 ggttattggggccatttgtgtgtttggtgtttgttgttgggggctttctaaagcaacttcatctgaagctacttcagag 18939888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 28709904 - 28709856
Alignment:
Q  57 ttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    |||||||||||| |||||| |||||||||| || |||||||| ||||||    
T  28709904 ttgttgttggggactttctgaagtaacttcttctgaagctacttcagag 28709856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0789 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 5282 - 5407
Alignment:
Q  26 aggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactc 125  Q
    ||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| | |||    
T  5282 aggttattgaggccatttgtaagtttggtgcatgttgttgggggctttctaaagtaactgcatcagaagctacttcagaggctctttctagattgggctc 5381  T
Q  126 aacacctggaaattcatctgagtagt 151  Q
    || || | | |||||| |||||||||    
T  5382 aaaacatagtaattcacctgagtagt 5407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 22740 - 22897
Alignment:
Q  26 aggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactc 125  Q
    |||||| |||||| ||| ||  ||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| || ||     
T  22740 aggttgatgaggccattcgtgcgtttgatgcttgttgatgggggctttctaaagtaacttcatcagaagctacttcagaggctctttctagatatggctg 22839  T
Q  126 aacacctggaaattcatctgagtagtgattgaccagattctctaaaactgaagtttct 183  Q
    ||||||||| | |||| ||||||| ||| |  ||| ||||||||| ||||| ||||||    
T  22840 aacacctggtagttcacctgagtaatgactagccatattctctaacactgaggtttct 22897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 1270 - 1120
Alignment:
Q  20 ttgggaaggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatt 119  Q
    ||||| || ||| |||||| || |||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| || |||||||||     
T  1270 ttgggtagtttgatgaggccatctgtaagtttggtgcttgttgttcggggctttctaaagtatcttcatcagaagctacttcagaggctatttctagata 1171  T
Q  120 tgactcaacacctggaaattcatctgagtagtgattgaccagattctctaa 170  Q
     | |||||||| ||| | |||| ||||||||||| |  |||||| ||||||    
T  1170 gggctcaacacttggtagttcacctgagtagtgactagccagatactctaa 1120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 40231 - 40397
Alignment:
Q  48 gtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaacacctggaaattcatctgag 147  Q
    |||||| | ||||||||||| ||||||||||||||||||| |||||||||| |||||| || || ||||||  | |||||||||||| | |||| |||||    
T  40231 gtttggcgattgttgttgggagctttctaaagtaacttcaccagaagctacttcagaggcttttgctagatagggctcaacacctggtagttcacctgag 40330  T
Q  148 tagtgattgaccagattctctaaaactgaagtttctgattttttgttagatgaagtgggatgagatg 214  Q
    |||||| |  ||||||||||||| ||||  ||||||||  ||| ||| | ||||||  |||||||||    
T  40331 tagtgactagccagattctctaacactggtgtttctgaagtttggttggttgaagtttgatgagatg 40397  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 36135879 - 36136043
Alignment:
Q  6 aggagcagagacagttgggaaggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    |||| ||||||||  ||||  ||| |||||||| |||| |  ||||||||  | |||||||||||||||||||||||||||| |||||||||||| ||||    
T  36135879 aggaacagagacatctgggttggtagttgaggccatttctgcgtttggtgtatattgttgggggctttctaaagtaacttcaccagaagctaccttagag 36135978  T
Q  106 actctttctagatttgactcaacacctggaaattcatctgagtagtgattgaccagattctctaa 170  Q
     ||||||||   || |||||||||||||| |||||| | || ||||||||   ||||||||||||    
T  36135979 gctctttctgagttggactcaacacctggtaattcaccagaatagtgatttttcagattctctaa 36136043  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 22462827 - 22462778
Alignment:
Q  49 tttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctac 98  Q
    ||||||| |||||||||||||||||||||| ||||||| || ||||||||    
T  22462827 tttggtgattgttgttgggggctttctaaaataacttcttctgaagctac 22462778  T

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Target: scaffold0261 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 3030 - 2899
Alignment:
Q  26 aggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactc 125  Q
    ||||| ||||||| ||||||| ||| ||||||||| ||||||||||||| ||||||||||||  ||||||| | | |||| || | |||||||||  |||    
T  3030 aggttattgaggccatttgtacgttaggtgcttgtagttgggggctttccaaagtaacttcactagaagctgctttagaggctttctctagatttagctc 2931  T
Q  126 aacacctggaaattcatctgagtagtgattga 157  Q
    |  |||||| |||||| |||||||||||||||    
T  2930 acaacctggtaattcacctgagtagtgattga 2899  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 18379892 - 18379961
Alignment:
Q  21 tgggaaggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatca 90  Q
    |||| |||||| |||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  18379892 tgggtaggttgatgaggcaatttgtgtgtttggtgcttgttgttgggggctttctaaagtaacttcatca 18379961  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 22804095 - 22804164
Alignment:
Q  36 ggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    ||||||||||   ||||||| |||||||||||||||||||||||||||||| || |||||||||||||||    
T  22804095 ggctatttgtgattttggtgattgttgttgggggctttctaaagtaacttcttctgaagctacctcagag 22804164  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 21627085 - 21627151
Alignment:
Q  32 ttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctac 98  Q
    ||||||| ||||||  |||||||| ||||||||| ||||||||||||| ||||||||| ||||||||    
T  21627085 ttgaggccatttgtgtgtttggtgtttgttgttgtgggctttctaaagcaacttcatctgaagctac 21627151  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 20110998 - 20110942
Alignment:
Q  11 cagagacagttgggaaggttgttgaggctatttgtaggtttggtgcttgttgttggg 67  Q
    ||||||||  |||| |||||||| |||| ||||||| ||| ||||||||||||||||    
T  20110998 cagagacatctgggcaggttgttaaggccatttgtacgttaggtgcttgttgttggg 20110942  T

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Target: scaffold0324 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 1543 - 1644
Alignment:
Q  40 atttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaacacctggaaatt 139  Q
    ||||||| ||| ||| | ||||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||  |||| ||| | |||||| ||||    
T  1543 atttgtaagttgggttcatgttgttgggggctttctaaaataacttcatcagaagctatttcagaggctctttctaagtttggctctaaacctggtaatt 1642  T
Q  140 ca 141  Q
    ||    
T  1643 ca 1644  T

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Target: scaffold0120 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 35099 - 35027
Alignment:
Q  26 aggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctac 98  Q
    ||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||| || ||||||| |||||||    
T  35099 aggttgttgaggccatttgtaagtttgctgcttgatgttgggggctttctaaagcaaattcatcaaaagctac 35027  T

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Target: scaffold0120; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 43906 - 43978
Alignment:
Q  26 aggttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctac 98  Q
    ||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||| || ||||||| |||||||    
T  43906 aggttgttgaggccatttgtaagtttgctgcttgatgttgggggctttctaaagcaaattcatcaaaagctac 43978  T

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Target: scaffold0007 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 145091 - 145148
Alignment:
Q  48 gtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    |||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||    
T  145091 gtttggtgattgttgttgggggttttctaaagtaacttcttctgaagctacctcagag 145148  T

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Target: scaffold0183 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 978 - 1058
Alignment:
Q  32 ttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactcttt 112  Q
    ||||||| ||||||| ||| ||||  |||||||||||||||||| |||||||||||| ||||||||  |||||| ||||||    
T  978 ttgaggccatttgtaagttaggtgtatgttgttgggggctttctgaagtaacttcattagaagctatttcagaggctcttt 1058  T

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Target: scaffold1354 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1354
Description:

Target: scaffold1354; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 1313 - 1396
Alignment:
Q  58 tgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaacacctggaaattca 141  Q
    ||||||||||||||||||||| ||||||||||| ||||||  |||||| ||||||||   |||| ||||| |||||| ||||||    
T  1313 tgttgttgggggctttctaaaataacttcatcaaaagctatttcagaggctctttctgagtttggctcaaaacctggtaattca 1396  T

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Target: scaffold0175 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 9637 - 9470
Alignment:
Q  48 gtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagagactctttctagatttgactcaacacctggaaattcatctgag 147  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| |||| | |||| || | |  ||||||| ||||| | |||||| |||| | ||     
T  9637 gtttggtgcttattgttgggggatttctaaagtaacttcatcagaaactactttagaggctttctacagatttggctcaatatctggaagttcaccagaa 9538  T
Q  148 tagtgattgaccagattctctaaaactgaagtttctgattttttgttagatgaagtgggatgagatga 215  Q
     | ||| ||| |||| |||||||||  || ||||| || | || ||| | ||||||||| ||||||||    
T  9537 cactgactgatcagagtctctaaaatagatgtttcagactcttggttggttgaagtggggtgagatga 9470  T

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Target: scaffold0032 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 2018 - 1973
Alignment:
Q  48 gtttggtgcttgttgttgggggctttctaaagtaacttcatcagaa 93  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||    
T  2018 gtttggtgcttgttgttgagggctttctaaagtaatttcatcagaa 1973  T

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Target: scaffold0315 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 19950 - 20006
Alignment:
Q  29 ttgttgaggctatttgtaggtttggtgcttgttgttgggggctttctaaagtaactt 85  Q
    |||||||||| ||||||| ||||||||||| | |||||||||||||||||| |||||    
T  19950 ttgttgaggccatttgtaagtttggtgcttatagttgggggctttctaaagcaactt 20006  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 26744516 - 26744573
Alignment:
Q  48 gtttggtgcttgttgttgggggctttctaaagtaacttcatcagaagctacctcagag 105  Q
    ||||| || ||||||||||||||||||| || ||||||| || |||||||||| ||||    
T  26744516 gtttgttgtttgttgttgggggctttctgaaataacttcttctgaagctaccttagag 26744573  T

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