View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12335_low_1 (Length: 648)
Name: NF12335_low_1
Description: NF12335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12335_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Original strand, 4286460 - 4287085
Alignment:
| Q |
1 |
tattatattgaagattgaaccaaggacataagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgcattgcta |
100 |
Q |
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| T |
4286460 |
tattatattgaagattgaaccaaagacataagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgcattgcta |
4286559 |
T |
|
| Q |
101 |
tataaaaggtctcaaaacataaaactggtttaataaacagcaacatttatttatgaccacctgtttgatcatgacatacaattaattcatcagtccaccc |
200 |
Q |
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| T |
4286560 |
tataaaaggtctcaaaacataaaactggtttaataaacagcaacatttatttatgaccacctgtttgatcatgacatacaatt----catcagtccaccc |
4286655 |
T |
|
| Q |
201 |
caaagcacttgagaaggagttgatccaaacaaactgaattctacgtcaattcgaaacatcaaaaaatcataaatttgactacatgcaataaactagcact |
300 |
Q |
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| T |
4286656 |
caaagcacttgagaaggagttgatccaaacaaactgaattctacgtcaatttgaaacataaaaaaatcataaatttgactacatgcaataaactagcact |
4286755 |
T |
|
| Q |
301 |
tggtaactactccccagtaatgtatgaacagaattttgagaggaggaaacaataataacacacaggttttcattcaagattagattgttttatttagtca |
400 |
Q |
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| T |
4286756 |
tggcaactactccccagtaatgtatgaacagaattttgagaggaggaaacaataataacacacaggttttcattcaagattagattgttttatttagtca |
4286855 |
T |
|
| Q |
401 |
agataatcaatgtttctttttatgcttaggaatgaaagcacgctatcaatattagaactagtaaacacattttcttaaaacatgattgatgaaagcatga |
500 |
Q |
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| T |
4286856 |
agataatcaatgtttctttttatgcttaggaatgaaagcacgctatcaatattagaactagtaaacacattttcttaaaacatgattgatgaaagcatga |
4286955 |
T |
|
| Q |
501 |
agaaagtatatatattttaagaagcttcagttacaaacattagagcaaacatatccaaacaacactaactaatattcaaagttcaaaccaatttatgtca |
600 |
Q |
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|||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
4286956 |
agaaagtatatatattataagaagcttcaattacaaactttagagcaaacatatccaagaaacactaactaatattcgaagttcaaaccaatttatgtca |
4287055 |
T |
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| Q |
601 |
tccaggtcagagtgatagatttgatcatta |
630 |
Q |
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| T |
4287056 |
tccagttcagagtgatagatttgatcatta |
4287085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 463
Target Start/End: Original strand, 19972170 - 19972224
Alignment:
| Q |
409 |
aatgtttctttttatgcttaggaatgaaagcacgctatcaatattagaactagta |
463 |
Q |
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| T |
19972170 |
aatgtttctttttatgcttgggaatgaagtgatgctatcaatattagagctagta |
19972224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 510
Target Start/End: Original strand, 19972245 - 19972306
Alignment:
| Q |
449 |
atattagaactagtaaacacattttcttaaaacatgattgatgaaagcatgaagaaagtata |
510 |
Q |
| |
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|||||||| |||||||| | |||||| |||||||| ||||| |||||||||||||| |||| |
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| T |
19972245 |
atattagagctagtaaatgcgttttctcaaaacatggttgatcaaagcatgaagaaattata |
19972306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 17165434 - 17165498
Alignment:
| Q |
30 |
aagactgatattatctaagaaatctacttgcctacttggtgtgtcacaagaacaatgttcatgca |
94 |
Q |
| |
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| T |
17165434 |
aagattgacattatcaaggaaatctacttaactaattagtgtgttacaagaacaatgttcatgca |
17165498 |
T |
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