View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12336_high_3 (Length: 319)
Name: NF12336_high_3
Description: NF12336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12336_high_3 |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 31564316 - 31564629
Alignment:
| Q |
16 |
acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31564316 |
acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca |
31564415 |
T |
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| Q |
116 |
gacaaaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31564416 |
gacaaaggctcgagtaatggtttcaatttcatcttatttgcttaatgtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt |
31564515 |
T |
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| Q |
212 |
gaatttatacatgtatttcaatttttac------atgtaaaagagaaaaaatgaattatacttccattttgcccatcttctcatattgttttgcctcttg |
305 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31564516 |
gaatttatacatgtatttcaatttttacatgtaaatgtaaaagagaaaaaattaattatacttccattttgcccatcttttcatattgttttgcctcttg |
31564615 |
T |
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| Q |
306 |
tggattgatgtatt |
319 |
Q |
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||||||||| |||| |
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| T |
31564616 |
tggattgatatatt |
31564629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 111 - 275
Target Start/End: Complemental strand, 33416536 - 33416366
Alignment:
| Q |
111 |
cttcagacaaaggctcgagtaatggtttcaatttcatcttatttgctg----tttctattctaatttttctacatctaatagaagtaaatatgttagaca |
206 |
Q |
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||||||| ||||||||||||| |||||| ||||||||||||||||| |||| ||||| ||||||||| ||| |||||||||||||||||| |||| |
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| T |
33416536 |
cttcagatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttcaattctcatttttctatatcaaatagaagtaaatatgttggaca |
33416437 |
T |
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| Q |
207 |
gatttgaatttatacatgtatttcaatttttacatgtaaaagagaaaaaatga--attatacttccatttt |
275 |
Q |
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| T |
33416436 |
gatttgaatttatacatgtatttcagtttttacatgtaaaagagaagaaaagatgaatatacttccatttt |
33416366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 33385837 - 33385707
Alignment:
| Q |
25 |
agtacaagttgaagatgaagaagttgcaattgcatccgaga-caaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaagg |
123 |
Q |
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|||||||||||||| |||||||||||||||||||| | | ||||||||| | ||||||| ||||||||||||||||| ||||| | ||||| |||| |
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| T |
33385837 |
agtacaagttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggacaaaccggaattacagcgtcagatgaagg |
33385738 |
T |
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| Q |
124 |
ctcgagtaatggtttcaatttcatcttattt |
154 |
Q |
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|| ||| || |||| |||||||||||||||| |
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| T |
33385737 |
cttgagcaaaggttgcaatttcatcttattt |
33385707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 33281376 - 33281320
Alignment:
| Q |
40 |
tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac |
99 |
Q |
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|||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
33281376 |
tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac |
33281320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 33416592 - 33416538
Alignment:
| Q |
28 |
acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatct |
82 |
Q |
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| T |
33416592 |
acaagttgaagatgaagcggttgcaattgcatctgaaacaaacagcaacttatct |
33416538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 33302003 - 33301947
Alignment:
| Q |
40 |
tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac |
99 |
Q |
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|||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
33302003 |
tgaagaggttgctattgcatccgagacaaacatca---tatctaattctaatggacaaac |
33301947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 120 - 274
Target Start/End: Original strand, 30653203 - 30653360
Alignment:
| Q |
120 |
aaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagatttgaat |
215 |
Q |
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||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||| | |||||| ||||||||||||||||||| |
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| T |
30653203 |
aaggctcgagtaaaggttaaaatttcatcttatttgcgtcatgtttctattctaatttttcaacatctaaca-aagtaattatgttagacagatttgaac |
30653301 |
T |
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| Q |
216 |
ttatacatgtatttcaatttttacatgtaaaagagaaaaaatgaattatacttccattt |
274 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30653302 |
ttatacatgtctttcggtttttacatgtaaaagagaaaaaataaattatacttccattt |
30653360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 17443374 - 17443503
Alignment:
| Q |
28 |
acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaaggctcg |
127 |
Q |
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|||||||||| |||||||||||||||||||| || |||||||| | ||||||| ||||||||||||||| ||||||| ||||||| |||||| | |
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| T |
17443374 |
acaagttgaacgtgaagaagttgcaattgcatttgaaacaaacaatggcgtatctaactctaatggacaaaccagcattacagcttcagatgaaggcttg |
17443473 |
T |
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| Q |
128 |
agtaatggtttcaatttcatcttatttgct |
157 |
Q |
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| T |
17443474 |
accaaaggttgcaatttcatcttatttgct |
17443503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 12876 - 12932
Alignment:
| Q |
40 |
tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac |
99 |
Q |
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|||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
12876 |
tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac |
12932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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