View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12336_low_1 (Length: 533)
Name: NF12336_low_1
Description: NF12336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12336_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 14 - 522
Target Start/End: Complemental strand, 40061167 - 40060644
Alignment:
| Q |
14 |
tgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaa--------------cacaattgtcca |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40061167 |
tgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaatatatattaaaaaacacaattgtcca |
40061068 |
T |
|
| Q |
100 |
gtgtaatttctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccagtggtacattt-gtgatggctac |
198 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
40061067 |
gtgtaatttctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccggtggtacattttgtgatggctac |
40060968 |
T |
|
| Q |
199 |
aacatgaacatcatatatttagtatgtaggctgaaggacataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccgg |
298 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40060967 |
aacatgaacaacatatatttagtatgtaggctgaaggacataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccgg |
40060868 |
T |
|
| Q |
299 |
tacttcggtcaaagttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaattcctcttaaaaactggccttaagaa |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40060867 |
tacttcggtcaaagttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaattcctcttaaaaactggccttaagaa |
40060768 |
T |
|
| Q |
399 |
caataccatatagtaaattgaacttgtgaagaacatttcaggttgcaataccatataataattttgaaatgttccacctcgttggaaaaagcgtgccaca |
498 |
Q |
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| T |
40060767 |
caataccatatagtaaattgaacttgtgaagaacatttcaggttgcaataccatatagtaattttgaaatgttccacctcgttggaaaaagcgtgccaca |
40060668 |
T |
|
| Q |
499 |
gcaaatgcaagatcttccacaggt |
522 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
40060667 |
gcaaatgcaagatcttccacaggt |
40060644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 522
Target Start/End: Complemental strand, 40079284 - 40078766
Alignment:
| Q |
21 |
atctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaa-acaca----attgtccagtgtaatttctcttgt |
115 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||| ||||| | | |||||||| | ||||| |||||||||||||||||||||| | |
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| T |
40079284 |
atctttaagatgaccccacttttgctgcctaataattcctgcagcgtatagtagagatattaaacacacacagaaaattgtccagtgtaatttctcttct |
40079185 |
T |
|
| Q |
116 |
gcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatg-------tattaccagtggtacatttgtgatggctacaacatgaaca |
208 |
Q |
| |
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||| |||||| |||||||| ||| |||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
40079184 |
aaataaaagaaaataactatgcgtgtaatattattaatttatcttcttcgaggaccgaggtattaccagtggtgcatttgcgatggctacaacatgaaca |
40079085 |
T |
|
| Q |
209 |
tcatatatttagtatgtaggctgaagga--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcgg |
306 |
Q |
| |
|
||||| | |||| ||| |||| || ||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
40079084 |
aaatatactc-gtattaaggttgaaagagtcataccatactcatcaatcggtgcatcataatcataacttgtagcaatgaaaggtccgccggtacttcgg |
40078986 |
T |
|
| Q |
307 |
tcaaagttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaattcctctta-----aaaactggccttaag-aaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| | ||||||||||||| || | | | ||| || | |
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|
| T |
40078985 |
tcaaagttggttcctccatggtactgtttttgggcaagcaataaaaaatgataaagtattagctaattcctcttagagccaatttttccgtgaagtaata |
40078886 |
T |
|
| Q |
401 |
ataccatatagtaaattgaacttgtgaagaacatttcaggttgcaataccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagc |
500 |
Q |
| |
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|| |||||| |||||||||||| ||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40078885 |
ctatcatata--aaattgaacttgcgaacaacatttcaggttgcaataccatatagtagttttgaaatgttccaccacgttggaaaaagcgtgccacagc |
40078788 |
T |
|
| Q |
501 |
aaatgcaagatcttccacaggt |
522 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40078787 |
aaatgcaagatcttccacaggt |
40078766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 40087052 - 40086684
Alignment:
| Q |
14 |
tgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaacacaattgtccagtgtaatttctctt |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||| || ||||||||||| |||| ||||||||||||||||||| |
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|
| T |
40087052 |
tgtgcacatctttaagatgaccccacttcggctgcctaataactcctgcagcatgtagcgaagatattaaaaaatccaatcgtccagtgtaatttctctt |
40086953 |
T |
|
| Q |
114 |
gtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccagtggtacatttgtgatggctacaacatgaacatcata |
213 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||| |
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|
| T |
40086952 |
ctacatataagaaataaactatccatgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaaca--ata |
40086855 |
T |
|
| Q |
214 |
tattt-agtatgtaggctgaagga--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaa |
310 |
Q |
| |
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|||| | || | ||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||| |
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| T |
40086854 |
gatttcaataagaaggttgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaa |
40086755 |
T |
|
| Q |
311 |
agttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaattcctctta |
381 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
40086754 |
agttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacagtatcagctaattcctctta |
40086684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 417 - 522
Target Start/End: Complemental strand, 40086644 - 40086539
Alignment:
| Q |
417 |
tgaacttgtgaagaacatttcaggttgcaataccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttcc |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
40086644 |
tgaacttgtgaagaacatttcaggttgcaataccatatagtaattttgaaatgttccacctcgttggaaaaagcgtgcgacagcaaatgcgagatcttcc |
40086545 |
T |
|
| Q |
517 |
acaggt |
522 |
Q |
| |
|
|||||| |
|
|
| T |
40086544 |
acaggt |
40086539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 347
Target Start/End: Original strand, 22014420 - 22014530
Alignment:
| Q |
237 |
cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtttt |
336 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||| ||||| || | |||||| ||||| || || |||| ||||||| || ||||||||||||| |||| |
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|
| T |
22014420 |
cataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtactatttt |
22014519 |
T |
|
| Q |
337 |
tgagcaggcaa |
347 |
Q |
| |
|
||||| |||| |
|
|
| T |
22014520 |
agagcaagcaa |
22014530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 518
Target Start/End: Original strand, 22014765 - 22014836
Alignment:
| Q |
447 |
taccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccac |
518 |
Q |
| |
|
|||||| || ||||||||||| |||||||| || || |||||||| || || ||||| |||||||||||||| |
|
|
| T |
22014765 |
taccatgtagtaattttgaaaagttccaccccgctgaaaaaagcgcgcaacggcaaaagcaagatcttccac |
22014836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 22014264 - 22014313
Alignment:
| Q |
14 |
tgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgca |
63 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |||||| ||||||| |
|
|
| T |
22014264 |
tgtgcaaatctttaagatgaccccatttgggctgtctaatatctcctgca |
22014313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 52548939 - 52548999
Alignment:
| Q |
271 |
taacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtact |
331 |
Q |
| |
|
||||||||||||||||| ||||| || | | |||| |||||||| ||||||||||| |||| |
|
|
| T |
52548939 |
taacttgtagcaatgaagggtccaccagaagttcgatcaaagttagttcctccatgatact |
52548999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 522
Target Start/End: Complemental strand, 35257931 - 35257855
Alignment:
| Q |
446 |
ataccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
522 |
Q |
| |
|
||||||||||||||||||||| |||| || || |||||||| || || |||||||||||||| ||||| |||||| |
|
|
| T |
35257931 |
ataccatataataattttgaagacttcctccacgctggaaaaaacgcgcaacagcaaatgcaaggtcttcaacaggt |
35257855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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