View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12336_low_2 (Length: 399)
Name: NF12336_low_2
Description: NF12336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12336_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 34435837 - 34435468
Alignment:
| Q |
1 |
agacacacgcaccagacacaagctgacacataactactaataataattttgaaaaaa--gacgtaattaaaggcaaccacatatgtcggatccggattgt |
98 |
Q |
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| T |
34435837 |
agacacacgcaccagacacaagctgacacataactactaataataattttgaaaaaatagacgtaattaaaggcaaccacatatgtcagatccggattgt |
34435738 |
T |
|
| Q |
99 |
aaataggttgtccaatcaagatcagacagtctacattacaagctaagtattttagatctnnnnnnnccaaaatcctctttaaaatctggactgttctatc |
198 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||||||||| |
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| T |
34435737 |
aaataggttgtccaatcaagatcagacagtctagattacaagctaagtattttagatctaa-------aaaaacc-----aaaatctggactgttctatc |
34435650 |
T |
|
| Q |
199 |
tttattgacagctgatatgcctgtgcagtcacactgcacccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgttcca |
298 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34435649 |
tttattgacagctgatatgcctgtgcaatcacactgcaaccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgttcca |
34435550 |
T |
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| Q |
299 |
tctgatgatggtgatgtattaatacattttttggcactaacttatataatccatatgattttataattccagccctatcatg |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34435549 |
tctgatgatggtgatgtattaatacattttttggcactaacttatataatccatatgattttataattccagccctatcatg |
34435468 |
T |
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