View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12337_high_2 (Length: 323)
Name: NF12337_high_2
Description: NF12337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12337_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 323
Target Start/End: Complemental strand, 5720924 - 5720611
Alignment:
| Q |
10 |
agatgaaaacactaatactaaatagcttaattgccgttcgtttgatcttagattgtctgtaatgccatgtttgaatgcatgtcttccttttcgtgaattt |
109 |
Q |
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| T |
5720924 |
agatgaaaacactgttactaaatagcttaattgccgtttgtttgatcttagattgtctgtaatgccatgtttgaatgcatgtcttccttttcgtgaattt |
5720825 |
T |
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| Q |
110 |
gcatctgccgttccggtattcttgcattgattattggataggagtagagtatgtgcctagttagtagttggacaaatgactataagtggaaatattttca |
209 |
Q |
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| T |
5720824 |
gcatctgccgttccggtattcttgcattgattattggataggagtagagtatgtgcctagttagtagttggacaaatgactatacgtggaaatattttca |
5720725 |
T |
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| Q |
210 |
ttttagatatgttgtattttaggttttgaattggacttaacaaattcctaatacaccctcacacgcttagtaatattggagctggtgcgtggataatatg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5720724 |
ttttagatatgttgtattttaggttttgaattggacttaacaaattcctaatacaccctcacacgcttagtaatattggagttggtgcgtggataatatg |
5720625 |
T |
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| Q |
310 |
gtcggtgagatacc |
323 |
Q |
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| T |
5720624 |
gtcggtgagatacc |
5720611 |
T |
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