View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12338_high_3 (Length: 290)
Name: NF12338_high_3
Description: NF12338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12338_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 3256040 - 3256242
Alignment:
| Q |
11 |
acctgtgacacaaagtcagatcatcatagcagacctaaaaccacaatataaaatatta----tattttttattagtttcctataaataaaacctatgatc |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3256040 |
acctctgacacaaagtcagatcatcatagcagacctaaaacaacaatataaaatattaataatattttttattagtttcctataaataaaacctatgatc |
3256139 |
T |
|
| Q |
107 |
attagataccgctgctataatttacttnnnnnnnttagctgcagaaataacaaatacctagttgtttgaagtgaatcatccaattattaaagcatgttgg |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3256140 |
attagataccgctgctataatttacttaaaaaaattagctgcagaaatcacaaatacctagttgtttgaagtgaatcatccaattattaaagcatgttgg |
3256239 |
T |
|
| Q |
207 |
ttt |
209 |
Q |
| |
|
||| |
|
|
| T |
3256240 |
ttt |
3256242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University