View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12338_high_4 (Length: 250)
Name: NF12338_high_4
Description: NF12338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12338_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 7767472 - 7767698
Alignment:
| Q |
18 |
agaaacagcttatgttggatcagacaccttcgattgctgccttccacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatat |
117 |
Q |
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| T |
7767472 |
agaaacagcttatgttggatcagacaccttcgattgctgccttccacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatat |
7767571 |
T |
|
| Q |
118 |
cgatttccagttgcaattggacatgcagccttacaccattttgaatgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767572 |
cgatttccagttgcaattggacatgcagccttacaccatttcgaatgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttca |
7767671 |
T |
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| Q |
218 |
tctacttcagggcattatctctgcttc |
244 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
7767672 |
tctacttcagggcattatttctgcttc |
7767698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 7773607 - 7773833
Alignment:
| Q |
18 |
agaaacagcttatgttggatcagacaccttcgattgctgccttccacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatat |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7773607 |
agaaacaacttatgttggatcagacaccttcgattgctgccttccacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatat |
7773706 |
T |
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| Q |
118 |
cgatttccagttgcaattggacatgcagccttacaccattttgaatgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttca |
217 |
Q |
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| T |
7773707 |
cgatttccagttgcaattggacatgcagccttacaccatttcgaatgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttca |
7773806 |
T |
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| Q |
218 |
tctacttcagggcattatctctgcttc |
244 |
Q |
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| T |
7773807 |
tctacttcagggcattatttctgcttc |
7773833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 7778442 - 7778659
Alignment:
| Q |
18 |
agaaacagcttatgttggatcagacaccttcgattgctgccttccacttgaagaggtttaagacagatggggtttttgttgaaaagattgacaagcatat |
117 |
Q |
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|||||||||||||||| |||||||||||||| |||||||| ||||| || ||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
7778442 |
agaaacagcttatgttagatcagacaccttcaattgctgcgttccatttaaagaggtttaagacatatgggatttttgttgaaaagattgacaagcatat |
7778541 |
T |
|
| Q |
118 |
cgatttccagttgcaattggacatgcagccttacaccattttgaatgatgcatcgtctaaatactatctatatgcagttgttgtccatactggaatttca |
217 |
Q |
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| T |
7778542 |
caatttcccgttggagttggacatgcagccttacaccatatcgaatgatgcatcgtccaaatatgatctgtatgcagtagttgtgcatactggattttca |
7778641 |
T |
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| Q |
218 |
tctacttcagggcattat |
235 |
Q |
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| T |
7778642 |
tctacttcagggcattat |
7778659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 12753690 - 12753540
Alignment:
| Q |
18 |
agaaacagcttatgttggatcagacaccttcgattgctgccttccacttgaagaggtttaagacagatggggttttt---gttgaaaagattgacaagca |
114 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||| |||| | | |||||||||||||||||||| |
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| T |
12753690 |
agaaacagcttatgttggatcagacaccttcaattgctgcattccatttaaagaggtttaagacagttgggaataatgcagttgaaaagattgacaagca |
12753591 |
T |
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| Q |
115 |
tatcgatttccagttgcaattggacatgcagccttacaccattttgaatga |
165 |
Q |
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| T |
12753590 |
tatcaattttccattggagttggatttgcaaccttacaccattttgaatga |
12753540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 12816650 - 12816500
Alignment:
| Q |
18 |
agaaacagcttatgttggatcagacaccttcgattgctgccttccacttgaagaggtttaagacagatggggttttt---gttgaaaagattgacaagca |
114 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||| |||| | | |||||||||||||||||||| |
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| T |
12816650 |
agaaacagcttatgttggatcagacaccttcaattgctgcattccatttaaagaggtttaagacagttgggaataatgcagttgaaaagattgacaagca |
12816551 |
T |
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| Q |
115 |
tatcgatttccagttgcaattggacatgcagccttacaccattttgaatga |
165 |
Q |
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| T |
12816550 |
tatcaattttccattggagttggatttgcaaccttacaccattttgaatga |
12816500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 12753438 - 12753378
Alignment:
| Q |
183 |
atctatatgcagttgttgtccatactggaatttcatctacttcagggcattatctctgctt |
243 |
Q |
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||||||||||||||||||| |||| ||||| ||||||| || ||||||||| ||||||| |
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| T |
12753438 |
atctatatgcagttgttgtgcataatggaacttcatctgactctgggcattatttctgctt |
12753378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 12816398 - 12816338
Alignment:
| Q |
183 |
atctatatgcagttgttgtccatactggaatttcatctacttcagggcattatctctgctt |
243 |
Q |
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||||||||||||||||||| |||| ||||| ||||||| || ||||||||| ||||||| |
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| T |
12816398 |
atctatatgcagttgttgtgcataatggaacttcatctgactctgggcattatttctgctt |
12816338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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