View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12338_low_2 (Length: 530)
Name: NF12338_low_2
Description: NF12338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12338_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 6 - 514
Target Start/End: Original strand, 19343205 - 19343709
Alignment:
| Q |
6 |
agcagcagagaacctccaaggaaagatgaacctattaagctaccagattctgttcagaactctccagtttcagatgtgattttctcttannnnnnnacta |
105 |
Q |
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| T |
19343205 |
agcaccagagaacctccaaggaaagatgaacctattaagctaccagattctgttcagaactctccagtttcagatgtaattttctcttatttttcaccat |
19343304 |
T |
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| Q |
106 |
ctttgtttcttcattgtatatgtatagttttgttgtaacttgtcacctaagaattgttatgacttacatgtgtgtgatgtagttgctgaaaaaataccag |
205 |
Q |
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| T |
19343305 |
ttttgtttcttcattgtatacgtatagttttgttgtaacttgtcacctaagaattgttatgactaacatgtgtgtgatgtagttgctgaagaaataccag |
19343404 |
T |
|
| Q |
206 |
gatccaagtaaaaggcctcaaagggatttaggcttagctataaagccttttactggaatgatgatttcttcgatgggtcgtcttaatcgaacacatgtat |
305 |
Q |
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| T |
19343405 |
gatccaagtaaaaggcctcaaagggatttaggcttagctataaagccttttactggaatgatgatttctttgatgggtcgtcttaatcgaacacatgtat |
19343504 |
T |
|
| Q |
306 |
gcatctatgttgttattgttgcattagtaactaactaattaactaactgctactgagttttgttgattggattttgtttttggttacttagcaatattgg |
405 |
Q |
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| T |
19343505 |
gtatctatgttattattgttgcattag----taactaattaaccaactgctactgagttttgttgattggattttgtttctggctacttagcaatattgg |
19343600 |
T |
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| Q |
406 |
nnnnnnncaattgaaaagcatggagggaaggtggcaaactctatcattggtaatgtgatagaattttcttttttcatccttctgttgctaggaatttcta |
505 |
Q |
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| T |
19343601 |
aaaaaaacaattgaaaagcatggagggaaggtggcaaactctatcattggtaatgtaatagaattttctattttcatccttctgttgctaggaatttctg |
19343700 |
T |
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| Q |
506 |
taacctggt |
514 |
Q |
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| T |
19343701 |
taacctggt |
19343709 |
T |
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