View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12338_low_6 (Length: 201)
Name: NF12338_low_6
Description: NF12338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12338_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 12811969 - 12812044
Alignment:
| Q |
9 |
agcagcacagagaacagacagttcataagctttcttgagcaaaccatttcttctttttgagaaagttacctgccgg |
84 |
Q |
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| T |
12811969 |
agcatcacagagaacagacagttcataagctttcttgagcaaaccatttcttctttttgagaaagttacctgccgg |
12812044 |
T |
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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 30642907 - 30642962
Alignment:
| Q |
20 |
gaacagacagttcataagctttcttgagcaaaccatttcttctttttgagaaagtt |
75 |
Q |
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| T |
30642907 |
gaacagacagttcataagcttttttgagcaaaccatttcttctctttgagaaagtt |
30642962 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 5546428 - 5546365
Alignment:
| Q |
14 |
cacagagaacagacagttcataagctttcttgagcaaaccatttcttctttttgagaaagttac |
77 |
Q |
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| T |
5546428 |
cacaaagaacagataattcatatgctttcttcaacaaaccatttcttcttttgcagaaagttac |
5546365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 28470281 - 28470206
Alignment:
| Q |
9 |
agcagcacagagaacagacagttcataagctttcttgagcaaaccatttcttctttttgagaaagttacctgccgg |
84 |
Q |
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| T |
28470281 |
agcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccgg |
28470206 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 5230064 - 5230011
Alignment:
| Q |
9 |
agcagcacagagaacagacagttcataagctttcttgagcaaaccatttcttct |
62 |
Q |
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|||| |||| |||||||| ||||||||||||||||| || | |||||||||||| |
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| T |
5230064 |
agcatcacaaagaacagaaagttcataagctttcttaagaagaccatttcttct |
5230011 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 47271129 - 47271190
Alignment:
| Q |
19 |
agaacagacagttcataagctttcttgagcaaaccatttcttctttttgagaaagttacctg |
80 |
Q |
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|||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| |
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| T |
47271129 |
agaacagaaagttcataagctttcttgattaaaccattccttctctttgagaaagtaacctg |
47271190 |
T |
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