View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12339_high_2 (Length: 277)
Name: NF12339_high_2
Description: NF12339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12339_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 28507295 - 28507035
Alignment:
| Q |
1 |
gtggtatgcactgattgggtcccacaaatgaagatattaggtcacatagcagttggtggattcttgactcatgcagggtggacatcggtggtagaggccg |
100 |
Q |
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| T |
28507295 |
gtggtatgcactgattgggtcccacaaatgaagatattaggtcacatggcagttggtggattcttgactcatgcagggtggacatcggtggtagaggcag |
28507196 |
T |
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| Q |
101 |
ttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcagtgcctag |
200 |
Q |
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| T |
28507195 |
ttcaacatgagaagccacttgtgttgttgacgtatctttcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcagtgcctag |
28507096 |
T |
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| Q |
201 |
agatgagagagatgggtctttcacaagtgattcagttgctcactcaattaggctgattgtg |
261 |
Q |
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| T |
28507095 |
agatgagagagatgggtctttcacaagtgattcggttgctcactcaattaggctgattgtg |
28507035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 28494749 - 28494498
Alignment:
| Q |
1 |
gtggtatgcactgattgggtcccacaaatgaagatattaggtcacatagcagttggtggattcttgactcatgcagggtggacatcggtggtagaggccg |
100 |
Q |
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| T |
28494749 |
gtggtatgcactgaatgggccccacaaatgaagatattaagccacgtggcagttggtggattcttgactcatgcagggtggacatcggtggtagaagcag |
28494650 |
T |
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| Q |
101 |
ttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcagtgcctag |
200 |
Q |
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| T |
28494649 |
ttcaacatgagaagccacttgtgttgttaacgtgtcttgcagatcaaggaataaatgcaagaatgttggaagaaaagaagatgggatactcagtgcctag |
28494550 |
T |
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| Q |
201 |
agatgagagagatgggtctttcacaagtgattcagttgctcactcaattagg |
252 |
Q |
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| T |
28494549 |
agatgagagagatgggtctttcacaagtgatatggtggctcactcgattagg |
28494498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 28491427 - 28491180
Alignment:
| Q |
4 |
gtatgcactgattgggtcccacaaatgaagatattaggtcacatagcagttggtggattcttgactcatgcagggtggacatcggtggtagaggccgttc |
103 |
Q |
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| T |
28491427 |
gtatgcactgattgggctccgcaaatgaagatattagggcacatggcaattggtgtgttcttttctcacgcaggttggacatcagtggtggaagcagttc |
28491328 |
T |
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| Q |
104 |
agaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggtactcagtgcctagaga |
203 |
Q |
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| T |
28491327 |
aaaacgagaagccacttgtgttgatgacatttcttgtagaccagggaataaatgcgaaggtgttggaagaaaagaagatggcatacacggtgcctagaga |
28491228 |
T |
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| Q |
204 |
tgagagagatgggtctttcacaagtgattcagttgctcactcaattag |
251 |
Q |
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| T |
28491227 |
tgagcaagatgggtcattcacaagtgactcagtggctcgcacaattag |
28491180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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