View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12339_high_3 (Length: 245)
Name: NF12339_high_3
Description: NF12339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12339_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 33268754 - 33268534
Alignment:
| Q |
21 |
tctatctctagtttaagtatgttgtgtaaagtattataattggttaattctaatacacttgcaggttcattttcaagaacagcagtaaatttcagtgcaa |
120 |
Q |
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| T |
33268754 |
tctatctctagtttaagtatgttgtgtaaagtattataattggttaattcttatacacttgcaggttcattttcaagaacagcagtaaatttcagtgcaa |
33268655 |
T |
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| Q |
121 |
gatgtcaatcatcagtatcaaatattgtgatggctataacagtgattctttgtttggaattgtttacaaggctgttatattacacacctgtggctatact |
220 |
Q |
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| T |
33268654 |
gatgtcaatcatcagtatcaaatattgtgatggctataacagtgattctgtgtttggaattgtttacaaggctgttatattacacacctgtggctatact |
33268555 |
T |
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| Q |
221 |
tgcttctataatcctctctgc |
241 |
Q |
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||||||||||||||||||||| |
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| T |
33268554 |
tgcttctataatcctctctgc |
33268534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 25705546 - 25705388
Alignment:
| Q |
80 |
tgcaggttcattttcaagaacagcagtaaatttcagtgcaagatgtcaatcatcagtatcaaatattgtgatggctataacagtgattctttgtttggaa |
179 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||| || |||||||||||||||||||||| || || |||||| | | || || |
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| T |
25705546 |
tgcaggttcattttcaagaacagcagttaatttcagtgcaggatgtcaaacagcagtatcaaatattgtgatggcaattactgtgattttgttcctgcaa |
25705447 |
T |
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| Q |
180 |
ttgtttacaaggctgttatattacacacctgtggctatacttgcttctataatcctctc |
238 |
Q |
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|| ||| ||||||| ||||| ||||||||| ||||||| |||||| |||| |||||||| |
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| T |
25705446 |
ttatttgcaaggctattatactacacacctatggctatccttgctgctatcatcctctc |
25705388 |
T |
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