View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12339_low_1 (Length: 1128)

Name: NF12339_low_1
Description: NF12339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12339_low_1
NF12339_low_1
[»] chr7 (26 HSPs)
chr7 (22-1069)||(36464076-36465119)
chr7 (158-569)||(8414489-8414886)
chr7 (158-569)||(3934742-3935139)
chr7 (159-565)||(3932507-3932899)
chr7 (159-488)||(19788938-19789272)
chr7 (161-488)||(19786632-19786964)
chr7 (159-529)||(8733495-8733850)
chr7 (159-564)||(3051993-3052387)
chr7 (157-357)||(8731174-8731359)
chr7 (281-529)||(42678669-42678934)
chr7 (159-245)||(18395411-18395497)
chr7 (159-245)||(42678571-42678657)
chr7 (159-245)||(16496953-16497039)
chr7 (159-245)||(16535135-16535221)
chr7 (159-245)||(16630441-16630527)
chr7 (247-357)||(28610315-28610424)
chr7 (443-569)||(16497078-16497204)
chr7 (443-566)||(16535260-16535383)
chr7 (443-566)||(16630279-16630402)
chr7 (156-245)||(21769066-21769155)
chr7 (501-569)||(16535288-16535356)
chr7 (501-569)||(16630306-16630374)
chr7 (283-335)||(18395336-18395388)
chr7 (161-405)||(19093846-19094092)
chr7 (159-213)||(42680808-42680862)
chr7 (501-569)||(3932533-3932601)
[»] chr8 (8 HSPs)
chr8 (159-569)||(21268120-21268525)
chr8 (159-569)||(36379465-36379863)
chr8 (158-569)||(36377180-36377578)
chr8 (159-529)||(4876820-4877176)
chr8 (159-529)||(4879148-4879504)
chr8 (157-529)||(24519151-24519510)
chr8 (461-565)||(21268447-21268551)
chr8 (506-569)||(4879138-4879201)
[»] chr1 (13 HSPs)
chr1 (159-569)||(29833076-29833471)
chr1 (159-569)||(734579-734974)
chr1 (159-569)||(2403835-2404223)
chr1 (159-529)||(8933549-8933913)
chr1 (159-357)||(10909108-10909292)
chr1 (158-357)||(10911352-10911536)
chr1 (159-357)||(13011698-13011881)
chr1 (280-377)||(29833852-29833949)
chr1 (159-245)||(29833960-29834046)
chr1 (435-565)||(2416660-2416791)
chr1 (159-360)||(2409957-2410136)
chr1 (275-434)||(18353733-18353894)
chr1 (447-518)||(419213-419284)
[»] chr4 (14 HSPs)
chr4 (159-565)||(45161971-45162364)
chr4 (161-569)||(45166859-45167254)
chr4 (158-529)||(42468438-42468795)
chr4 (159-529)||(42470768-42471124)
chr4 (280-497)||(50855868-50856085)
chr4 (159-430)||(19429076-19429334)
chr4 (159-357)||(13774151-13774336)
chr4 (283-485)||(8739264-8739467)
chr4 (162-357)||(13776449-13776630)
chr4 (159-245)||(50855771-50855857)
chr4 (295-421)||(43179575-43179710)
chr4 (282-416)||(24908156-24908298)
chr4 (506-569)||(42468742-42468805)
chr4 (159-220)||(8739501-8739562)
[»] chr2 (16 HSPs)
chr2 (159-569)||(31486671-31487069)
chr2 (157-569)||(31488955-31489355)
chr2 (270-557)||(29801774-29802067)
chr2 (159-357)||(42275556-42275739)
chr2 (159-357)||(42277782-42277965)
chr2 (158-567)||(23859767-23860188)
chr2 (277-529)||(34576694-34576969)
chr2 (159-245)||(5164151-5164237)
chr2 (165-245)||(8995076-8995156)
chr2 (165-245)||(15730013-15730093)
chr2 (159-221)||(39816089-39816151)
chr2 (167-220)||(34576612-34576665)
chr2 (458-569)||(15729871-15729981)
chr2 (281-322)||(8995169-8995210)
chr2 (493-569)||(34576903-34576979)
chr2 (493-560)||(29801802-29801869)
[»] chr5 (19 HSPs)
chr5 (159-569)||(11852175-11852561)
chr5 (281-569)||(37207660-37207948)
chr5 (280-569)||(23164347-23164636)
chr5 (280-569)||(22600700-22600989)
chr5 (280-569)||(11850014-11850303)
chr5 (281-424)||(37215396-37215539)
chr5 (281-529)||(1779316-1779581)
chr5 (158-245)||(11849916-11850003)
chr5 (159-245)||(23164254-23164340)
chr5 (158-245)||(22601000-22601088)
chr5 (159-245)||(37215551-37215638)
chr5 (159-245)||(1779222-1779303)
chr5 (318-569)||(1779587-1779855)
chr5 (159-237)||(21743719-21743797)
chr5 (159-230)||(37207998-37208070)
chr5 (270-357)||(21743622-21743709)
chr5 (159-220)||(15469197-15469258)
chr5 (283-323)||(1779181-1779221)
chr5 (462-529)||(37207640-37207707)
[»] scaffold0599 (1 HSPs)
scaffold0599 (159-394)||(1579-1801)
[»] chr3 (6 HSPs)
chr3 (159-357)||(4530835-4531020)
chr3 (158-351)||(4533138-4533318)
chr3 (283-565)||(18966221-18966518)
chr3 (357-432)||(1701104-1701179)
chr3 (358-414)||(8535522-8535578)
chr3 (493-565)||(39578235-39578307)
[»] scaffold0050 (6 HSPs)
scaffold0050 (270-436)||(29261-29426)
scaffold0050 (270-436)||(31574-31741)
scaffold0050 (159-220)||(29453-29514)
scaffold0050 (159-220)||(31768-31829)
scaffold0050 (482-570)||(31439-31527)
scaffold0050 (482-569)||(29122-29209)
[»] scaffold0008 (2 HSPs)
scaffold0008 (159-245)||(88445-88531)
scaffold0008 (481-565)||(73069-73153)
[»] scaffold1361 (1 HSPs)
scaffold1361 (159-245)||(53-140)
[»] scaffold0098 (1 HSPs)
scaffold0098 (159-237)||(3707-3785)
[»] chr6 (2 HSPs)
chr6 (291-497)||(21199149-21199374)
chr6 (161-220)||(20642300-20642359)
[»] scaffold0312 (1 HSPs)
scaffold0312 (447-518)||(11287-11358)
[»] scaffold0045 (2 HSPs)
scaffold0045 (156-220)||(64082-64144)
scaffold0045 (156-220)||(71414-71476)


Alignment Details
Target: chr7 (Bit Score: 982; Significance: 0; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 982; E-Value: 0
Query Start/End: Original strand, 22 - 1069
Target Start/End: Original strand, 36464076 - 36465119
Alignment:
Q  22 aagctatggaagtatggaagtaaatcatgcgaatccaagtcataaaacatcgtatacacgttctgtgtgtctggtttggattccnnnnnnncaagtatca 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  36464076 aagctatggaagtatggaagtaaatcatgcgaatccaagtcataaaacatcgtatacacgttctgtgtgtctggtttggattccaaaaaaacaagtatca 36464175  T
Q  122 tcctaatgtagcacaaagcatttttcgaggaatcatttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaa 221  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464176 tcctaatgtagcacaaagcatttttcgaggaatcgtttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaa 36464275  T
Q  222 gttatattacttgaatgattcaattaatgcttgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctagga 321  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464276 gttatattacttgaatgattcaat----gcttgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctagga 36464371  T
Q  322 aggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaaga 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464372 aggctctccattataaactagaaatatctagaaacaaagaaaagtctggagatatggatactctagtacataaaactagaaggatctagaaaagtcaaga 36464471  T
Q  422 cttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccac 521  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36464472 cttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattctagagacttctatattattatttagtgttctagagacttccac 36464571  T
Q  522 attattctctgctattctagagtcttccatattatttttcatcattcttcttcatcatcgttgcttttattattcctgcttttgacggtatagtttcatg 621  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464572 attattctctagtattctagagtcttccatattatttttcatcattcttcttcatcatcgttgcttttattattcctgcttttgacggtatagtttcatg 36464671  T
Q  622 gaagggagaggggtctcattcattttggagaaccagacctgagcattacgtactcatcaggtttttgatataggcgacaacgtttttaaacttcctttta 721  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464672 gaagggagaggggtctcattcattttggagcaccagacctgagcattacgtactcatcaggtttttgatataggcgacaacgtttttaaacttcctttta 36464771  T
Q  722 ggttcgcttagctaattctgttgattttaagattgttgataaggaagcacaagtagataggttcctctcaagagaatatggtcattttcattgggtattt 821  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464772 ggttcgcttagctaattctgttgattttaagattgttgataaggaagcacaagtagataggttcctctcaagagaatatggtcattttcattgggtattt 36464871  T
Q  822 gattgtgtgaatgaatgattaatttttccaacaaaagcttatatggtgggaagggaaggtaacttctaattctcttgtgttagtgaacttccttatctat 921  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464872 gattgtgtgaatgaatgattaatttttccaacaaaagcttatatggtgggaagggaaggtaacttctaattctcttgtgttagtgaacttccttatctat 36464971  T
Q  922 gttgaaatcgctataacccttatctatgtagacattgtaagtaatgatttacgtcggatttgcatcataaaaatctgctttaaaatcaatatgtattagt 1021  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464972 gttgaaatcgctataacccttatctatgtagacattgtaagtaatgatttacgtcggatttgcatcataaaaatctgctttaaaatcaatatgtattagt 36465071  T
Q  1022 attatagtcttgtacaaggcaatcatgtagctagtaatatactataaa 1069  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36465072 attatagtcttgtacaaggcaatcatgtagctagtaatatactataaa 36465119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 158 - 569
Target Start/End: Original strand, 8414489 - 8414886
Alignment:
Q  158 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 257  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||    |||||| |    
T  8414489 ttggctcagggacaaaaggaaaggtagagaaaatagaaaaacactctaatattctcaaagaaaagttatattatttgaatgattcaat----gcttgaat 8414584  T
Q  258 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    ||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  8414585 atgcttgagtat---------gccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaaaatctagaaaca 8414675  T
Q  358 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 457  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  8414676 aagaaaagtctagagatatggatattttagtatataaaactagaag-atctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagttt 8414774  T
Q  458 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatt 557  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  8414775 ccttattattccctagtattctagagacttctatattattctttagtgttctagatacttccacattattctctagtattctagagtcttccatattatt 8414874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 158 - 569
Target Start/End: Complemental strand, 3935139 - 3934742
Alignment:
Q  158 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 257  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| |    
T  3935139 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat----gcttgatt 3935044  T
Q  258 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    |||||||||||||          ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  3935043 atgcttgagtatc----------caaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaaca 3934954  T
Q  358 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 457  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |    
T  3934953 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagctt 3934854  T
Q  458 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatt 557  Q
    |||||||||||||||||||||||||| |||| || ||||| |||||| ||||||||||||||| ||||||||     ||||||||| |||||||||||||    
T  3934853 ccttattattccctagtattctagagtcttccatattattctttagtcttctagagacttccatattattcttcatcattctagagacttccatattatt 3934754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 159 - 565
Target Start/End: Complemental strand, 3932899 - 3932507
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| ||    
T  3932899 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat----gcttgatta 3932804  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 358  Q
    ||||||||||||          ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  3932803 tgcttgagtatc----------caaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaacaa 3932714  T
Q  359 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 458  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  3932713 agaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttc 3932614  T
Q  459 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattt 558  Q
    ||||||||||||||||||||||||| |||| || ||||| |||||| ||||||||||||||| ||||||||     ||||||||| |||||||||||||     
T  3932613 cttattattccctagtattctagagtcttccatattattctttagtcttctagagacttccatattattcttcatcattctagagacttccatattattc 3932514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 159 - 488
Target Start/End: Complemental strand, 19789272 - 19788938
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatg-----ct 252  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||   ||     ||    
T  19789272 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 19789173  T
Q  253 tgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctag 352  Q
    ||| ||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  19789172 tgagtat-cttgaatgtcttgaatatgccaaaacactaggtggtgagccttatttatactactctagtaaggctctccattacaaactagaaatatctag 19789074  T
Q  353 aaacaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagt 452  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19789073 aaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagt 19788974  T
Q  453 agcatccttattattccctagtattctagagacttc 488  Q
    ||| ||||||||||||||||||||||||||||||||    
T  19788973 agcttccttattattccctagtattctagagacttc 19788938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 161 - 488
Target Start/End: Complemental strand, 19786964 - 19786632
Alignment:
Q  161 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatg-----cttg 254  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||   ||     ||||    
T  19786964 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatcttg 19786865  T
Q  255 actatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa 354  Q
    | ||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19786864 agtat-cttgaatgtcttgaatatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaa 19786766  T
Q  355 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtag 454  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19786765 acaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtag 19786666  T
Q  455 catccttattattccctagtattctagagacttc 488  Q
    | |||||||||||||||| |||||||||||||||    
T  19786665 cttccttattattccctaatattctagagacttc 19786632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 159 - 529
Target Start/End: Original strand, 8733495 - 8733850
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaattaatgcttgact 257  Q
    |||||||||||||||||  |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||    ||||||      
T  8733495 tggctcagggacaaaagagaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaat----gcttgatg 8733590  T
Q  258 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  8733591 at---------tcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctcctttacaaactagaaatatctagaaaca 8733681  T
Q  358 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 457  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||| |    
T  8733682 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaaga---ccctagtgcttatttagtagtgtctagtagctt 8733778  T
Q  458 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 529  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||    
T  8733779 ccttattattccctagtattctagagacttctatattattctttagtgttctagagacttccatattattct 8733850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 159 - 564
Target Start/End: Complemental strand, 3052387 - 3051993
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||| |||||||||||||| ||||||||||||  ||||||  |||| ||||||||||||||  |||||||| ||||||| ||||||    |||||| ||    
T  3052387 tggctgagggacaaaaggaatggtagagaaaataaagaaac--tctattattctcaaagaaagtttatattatttgaatgcttcaat----gcttgagta 3052294  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 358  Q
    | ||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3052293 tacttgagtatat---------caaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 3052203  T
Q  359 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 458  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||    
T  3052202 agaaaagtctagagatatggatattctagtacataaaactagaaggatctagaaaagttaagacttccctaatgcttatttagtagtgtctagtagcttc 3052103  T
Q  459 cttattattcc----ctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatatt 554  Q
    |||||||||      |||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||  |||||||||||||||||||||    
T  3052102 cttattatttattatctagtattctagagacttctatattattctttagtgttatagagacttcgacattattctctagtattctagagtcttccatatt 3052003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 157 - 357
Target Start/End: Original strand, 8731174 - 8731359
Alignment:
Q  157 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgac 256  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||     
T  8731174 tttggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgat 8731269  T
Q  257 tatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 356  Q
    | |           || | | |||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||    
T  8731270 tct-----------ttaaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaattagaaatatctagaaac 8731358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 281 - 529
Target Start/End: Original strand, 42678669 - 42678934
Alignment:
Q  281 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca---------aagaaaagtctaga 371  Q
    ||||||||| ||||||||||||||||||||||||  | |||||| ||| ||||| ||||||||| ||||||||||||         |||||| | |||||    
T  42678669 caaaacacttggtggtgagccttatttatactaccttgggaaggttctacattacaaactagaattatctagaaacattgattacaaagaaaggcctaga 42678768  T
Q  372 gatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt------atttagtag--tgtctagtagcatccttat 463  Q
     | |||||||||||||  ||||  ||||||||||||||||||  | |||| || ||||||||||      |||||||||  ||||||||||| |||||||    
T  42678769 aacatggatactctaggtcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagtagagtgtctagtagcttccttat 42678868  T
Q  464 tattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 529  Q
    |||||| ||||||| |||||||||| || ||||| |||||| ||||||| ||||||| ||||||||    
T  42678869 tattccatagtattttagagacttccatattattctttagttttctagaaacttccatattattct 42678934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 18395497 - 18395411
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18395497 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 18395411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 42678571 - 42678657
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42678571 tggctcagggacaaaaggaaaggtagagaaaataaagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 42678657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 16496953 - 16497039
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16496953 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16497039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 16535135 - 16535221
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16535135 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16535221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 16630527 - 16630441
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16630527 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16630441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 247 - 357
Target Start/End: Original strand, 28610315 - 28610424
Alignment:
Q  247 aatgcttgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaat 346  Q
    ||||||||| ||||||| ||||||| || | |||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||    
T  28610315 aatgcttgagtatgcttcagtatct-gaatgtgcctaaacacttggtggtgagccttatttatactactctagaaaggctctacattacaaactagaaat 28610413  T
Q  347 atctagaaaca 357  Q
    |||||||||||    
T  28610414 atctagaaaca 28610424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 443 - 569
Target Start/End: Original strand, 16497078 - 16497204
Alignment:
Q  443 agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgct-attctag 541  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||| |  ||||| |||| | |||||||| | |||| |||||||| || | |||||||    
T  16497078 agtgtctagtagcttccttattattccatagtattctagaaacttccacattattctttattattctagaggcatccatattattct-tgatcattctag 16497176  T
Q  542 agtcttccatattatttttcatcattct 569  Q
    || ||||||||||||| || ||||||||    
T  16497177 agacttccatattattcttgatcattct 16497204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 443 - 566
Target Start/End: Original strand, 16535260 - 16535383
Alignment:
Q  443 agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgct-attctag 541  Q
    ||||||||||||| || |||||||||| |||||||||||||||||| |  ||||| |||| | |||||||| |||||| |||||||| || | ||||||     
T  16535260 agtgtctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattct-tgatcattctat 16535358  T
Q  542 agtcttccatattatttttcatcat 566  Q
    || ||||||||||||| || |||||    
T  16535359 agacttccatattattcttgatcat 16535383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 443 - 566
Target Start/End: Complemental strand, 16630402 - 16630279
Alignment:
Q  443 agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgct-attctag 541  Q
    ||||||||||||| || |||||||||| |||||||||||||||||| |  ||||| |||| | |||||||| |||||| |||||||| || | ||||||     
T  16630402 agtgtctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattct-tgatcattctat 16630304  T
Q  542 agtcttccatattatttttcatcat 566  Q
    || ||||||||||||| || |||||    
T  16630303 agacttccatattattcttgatcat 16630279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 21769066 - 21769155
Alignment:
Q  156 atttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    |||| |||||||||  |||||||||||||||||||| ||||||| || |||||||||||||||||  |  ||||| ||||||| ||||||    
T  21769066 attttgctcagggatgaaaggaaaggtagagaaaatagagaaactctttaatattctcaaagaaagttgttattatttgaatgtttcaat 21769155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 16535288 - 16535356
Alignment:
Q  501 tagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 569  Q
    |||| |||||||||||||||||||||||| |  |||||||||| ||||||||||||| || ||||||||    
T  16535288 tagtattctagagacttccacattattctttattattctagaggcttccatattattcttgatcattct 16535356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 501 - 569
Target Start/End: Complemental strand, 16630374 - 16630306
Alignment:
Q  501 tagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 569  Q
    |||| |||||||||||||||||||||||| |  |||||||||| ||||||||||||| || ||||||||    
T  16630374 tagtattctagagacttccacattattctttattattctagaggcttccatattattcttgatcattct 16630306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 18395388 - 18395336
Alignment:
Q  283 aaacactaggtggtgagccttatttatactactctaggaaggctctccattat 335  Q
    |||||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  18395388 aaacacttagtggtgagccttatttatactactctaggaaggctctacattat 18395336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 405
Target Start/End: Original strand, 19093846 - 19094092
Alignment:
Q  161 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgactatg 260  Q
    |||||||| |||||||| |||||||||||||  |||||| ||||||||||||||||||||  ||||||   ||  || |||   | |||| ||||  ||     
T  19093846 gctcagggtcaaaaggagaggtagagaaaat--agaaactctctaatattctcaaagaaagtttatat---ttatattatt---tgaatgtttga--att 19093935  T
Q  261 cttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaag----gctctccattataaactagaaatatctagaa-- 354  Q
     |||| || ||||||||||||  |||||| ||||| || |||||||||||||||||||| |||     |||| ||||| |||||||||||||||| ||      
T  19093936 tttgaata-cttgagtatgcctgaacacttggtggcgaaccttatttatactactctagaaagacgtactctacattacaaactagaaatatctaaaaat 19094034  T
Q  355 -------acaaagaaaagtctagagatatggatactctagtacataaaactagaagga 405  Q
           ||||||||||||||||||| ||||||||||||||  ||||  |||||||||    
T  19094035 atcgattacaaagaaaagtctagagacatggatactctagtttataagtctagaagga 19094092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 42680862 - 42680808
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctc 213  Q
    ||||| ||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  42680862 tggctgaggaacaaaatgaaaggtagagaaaatagagaaacactctaatattctc 42680808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 501 - 569
Target Start/End: Complemental strand, 3932601 - 3932533
Alignment:
Q  501 tagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 569  Q
    |||| |||||||| |||||| |||||||| |  | |||||||| ||||||||||||| |||||||||||    
T  3932601 tagtattctagagtcttccatattattctttagtcttctagagacttccatattattcttcatcattct 3932533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 159 - 569
Target Start/End: Original strand, 21268120 - 21268525
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgact 257  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||    |||||| |    
T  21268120 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat----gcttgatt 21268215  T
Q  258 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    || ||||||||| | || |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21268216 at-cttgagtatttggattatgcctaaacactaggtagtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaaca 21268314  T
Q  358 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 457  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |    
T  21268315 aagaaaagtctagagatatggatactttagtacataaaactagaaggatctagaaaagtcaagacttccctagt-tttatttagtagtgtctagtagctt 21268413  T
Q  458 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatt 557  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  21268414 ccttattattccctagtattctagagacttctatattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattatt 21268513  T
Q  558 tttcatcattct 569  Q
     |||| ||||||    
T  21268514 cttcaccattct 21268525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-152
Query Start/End: Original strand, 159 - 569
Target Start/End: Original strand, 36379465 - 36379863
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgact 257  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||                
T  36379465 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat------------ 36379552  T
Q  258 atgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 356  Q
      |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  36379553 --gcttgattatcttgagtatgccaaaacacccaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctggaaac 36379650  T
Q  357 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagca 456  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  36379651 aaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagct 36379750  T
Q  457 tccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattat 556  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  36379751 tccttattattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattat 36379850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 158 - 569
Target Start/End: Original strand, 36377180 - 36377578
Alignment:
Q  158 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgac 256  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||               
T  36377180 ttggctcaaggacaaa-ggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat----------- 36377267  T
Q  257 tatgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaa 355  Q
       |||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||  |||    
T  36377268 ---gcttgattattttgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaagtagaaatatctgaaaa 36377364  T
Q  356 caaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagc 455  Q
    |||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36377365 caaagaaaagttcagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagc 36377464  T
Q  456 atccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatatta 555  Q
     ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  36377465 ttccttattattccctagtattctagagacttctatattattctttagtcttctagagacttccacattattccttagtattctagagtcttccatatta 36377564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 159 - 529
Target Start/End: Complemental strand, 4877176 - 4876820
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||                 
T  4877176 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaatcattcaat------------- 4877090  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 358  Q
     |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4877089 -gcttgattatcttgagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 4876991  T
Q  359 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 458  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  4876990 agaaaagtctagagatatggatactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtttctagtagcttc 4876891  T
Q  459 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 529  Q
    |||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  4876890 cttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 4876820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 159 - 529
Target Start/End: Complemental strand, 4879504 - 4879148
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||                 
T  4879504 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaatcattcaat------------- 4879418  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 358  Q
     |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4879417 -gcttgattatcttgagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 4879319  T
Q  359 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 458  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  4879318 agaaaagtctagagatatggatactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtttctagtagcttc 4879219  T
Q  459 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 529  Q
    |||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  4879218 cttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 4879148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 157 - 529
Target Start/End: Original strand, 24519151 - 24519510
Alignment:
Q  157 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgac 256  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||     
T  24519151 tttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttgaatgattcaat----gcttgat 24519246  T
Q  257 tatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 356  Q
    ||||||| ||||         |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24519247 tatgcttcagta---------tgccaaaacactagatggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 24519337  T
Q  357 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagca 456  Q
    ||||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||     
T  24519338 aaagaaaagtctagagatatggatacttttgtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctggtagct 24519437  T
Q  457 tccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 529  Q
    |||||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  24519438 tccttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 24519510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 461 - 565
Target Start/End: Original strand, 21268447 - 21268551
Alignment:
Q  461 tattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattttt 560  Q
    ||||||||  |||| ||||||||||||| |  ||||| | |||| |||||||| |||||| ||||||||   | ||||||||| ||||||||||||| ||    
T  21268447 tattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattattcttcaccattctagagacttccatattattctt 21268546  T
Q  561 catca 565  Q
    |||||    
T  21268547 catca 21268551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 506 - 569
Target Start/End: Complemental strand, 4879201 - 4879138
Alignment:
Q  506 ttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 569  Q
    |||||||| |||||| ||||||||   | ||||||||| ||||||||||||| |||||||||||    
T  4879201 ttctagagtcttccatattattcttcaccattctagagacttccatattattcttcatcattct 4879138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 159 - 569
Target Start/End: Original strand, 29833076 - 29833471
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  29833076 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat------------- 29833162  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 358  Q
     ||||||  || |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29833163 -gcttgatgat-ttgaatgtgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 29833260  T
Q  359 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 458  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  29833261 agaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttc 29833360  T
Q  459 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattt 558  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||     
T  29833361 cttattattccctagtattctagagacttctatattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattattc 29833460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-152
Query Start/End: Original strand, 159 - 569
Target Start/End: Original strand, 734579 - 734974
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||||||||||| |||||||                 
T  734579 tggctcagggacaaaaggaaaggtagagaaaatagagaaacact--aatattctcaaggaaaagttatattacttgaatcattcaat------------- 734663  T
Q  259 tgcttgagtatcttgagtatg-ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
     |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  734664 -gcttgattatcttgagtatgaccaaaacactaggtggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaaca 734762  T
Q  358 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 457  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  734763 aagaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagctt 734862  T
Q  458 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatt 557  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||| ||  ||||||||||||||||||||||||    
T  734863 ccttgttattccctagtattctagagacttctatattattctttagtcttctaaagacttccacattattccctagtattctagagtcttccatattatt 734962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 159 - 569
Target Start/End: Original strand, 2403835 - 2404223
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaattaatgcttgact 257  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  |||||||| ||||||| |||              |    
T  2403835 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttc--------------t 2403920  T
Q  258 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    ||||||||      |||   ||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  2403921 atgcttga------tga---tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 2404011  T
Q  358 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 457  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |    
T  2404012 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagctt 2404111  T
Q  458 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatt 557  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||||||||  ||| ||||||||||| || |||||    
T  2404112 ccttattattccctagtattctagagacttctatattattctttagtcttctagagatttccacattattctctagtatcctagagtcttctattttatt 2404211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 159 - 529
Target Start/End: Original strand, 8933549 - 8933913
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    ||||||||| |     
T  8933549 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattttcaaagaaaagttatattacttgaatgattc----aatgcttgatt- 8933643  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa---- 354  Q
               ||||       |||||||||  ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||||||||        
T  8933644 -----------cttg-------caaaacacttagtggtgagccttatttatactactctaggaaggttctacattacaaactagaattatctagaaacat 8933725  T
Q  355 -----acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgc------ttatttagt- 442  Q
         ||||||||| | ||||| | |||||||||||||| ||||  ||||||||||||||||||  | |||| || ||||||||      |||||||||     
T  8933726 tgattacaaagaaaggcctagaaacatggatactctagttcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagta 8933825  T
Q  443 -agtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 529  Q
     |||||||| |||| ||||||||||||| ||||||| |||||||||| || || || |||||| || |||| | ||||| ||||||||    
T  8933826 gagtgtctaatagcttccttattattccatagtattttagagacttccatatttttctttagttttttagaaatttccatattattct 8933913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 159 - 357
Target Start/End: Complemental strand, 10909292 - 10909108
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaattaatgcttgact 257  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||| |    
T  10909292 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattc----aatgcttgatt 10909197  T
Q  258 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
     |           |||| | |||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  10909196 ct-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 10909108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 158 - 357
Target Start/End: Complemental strand, 10911536 - 10911352
Alignment:
Q  158 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 257  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |    
T  10911536 ttggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatt 10911441  T
Q  258 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
     |           |||| | |||| |||||||  ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  10911440 ct-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaagggtctacattacaaactagaaatatctagaaaca 10911352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 159 - 357
Target Start/End: Complemental strand, 13011881 - 13011698
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    ||||||||| |     
T  13011881 tggctcaggaacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattc----aatgcttgattc 13011786  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    |           |||| | || | |||||||  ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  13011785 t-----------ttgaatgtgtctaaacacttagtggtgagccttatttatactactctaggaaggctctacattaaaaactaaaaatatctagaaaca 13011698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 29833949 - 29833852
Alignment:
Q  280 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatg 377  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  29833949 ccaaaacactaggtagtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatg 29833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 29834046 - 29833960
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29834046 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaaggattcaat 29833960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 435 - 565
Target Start/End: Original strand, 2416660 - 2416791
Alignment:
Q  435 tatttagtagtgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttct-agagacttccacattattctctgc 533  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||| | |||| |||| |||||||||||||||||||||||     
T  2416660 tatttagtagtatctagtagcttccttattattccctagtattctagagagttctatattattctgtagtcttctgagagacttccacattattctctgg 2416759  T
Q  534 tattctagagtcttccatattatttttcatca 565  Q
    ||| ||||||||||| || ||||| |||||||    
T  2416760 tatcctagagtcttctattttattcttcatca 2416791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 159 - 360
Target Start/End: Original strand, 2409957 - 2410136
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaattaatgcttgact 257  Q
    ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||  |||||||| ||||||| |||              |    
T  2409957 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctataatattctcaaagaaaatattatattatttgaatgtttc--------------t 2410042  T
Q  258 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    ||||||||      |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  2410043 atgcttga------tga---tgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaattagcaatatctagaaaca 2410133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 275 - 434
Target Start/End: Complemental strand, 18353894 - 18353733
Alignment:
Q  275 gtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaaga--aaagtctagag 372  Q
    ||||||||||||||| || |||||||| || |||||||||||||| || ||||  ||||| ||| |||||| |||||||||||  ||  | |    | ||    
T  18353894 gtatgccaaaacacttggaggtgagccctaattatactactctagtaatgctccacattacaaaatagaaagatctagaaacattgattagaaataaaag 18353795  T
Q  373 atatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgct 434  Q
    | |||||||||||||| ||||  ||||||||||||||||||||  |||| || |||||||||    
T  18353794 acatggatactctagttcatatgactagaaggatctagaaaagataagattttcctagtgct 18353733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 447 - 518
Target Start/End: Original strand, 419213 - 419284
Alignment:
Q  447 tctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttc 518  Q
    ||||||||| ||||||||||||  ||  ||| |||||||||| || ||||| ||||||||||||||||||||    
T  419213 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 419284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 159 - 565
Target Start/End: Complemental strand, 45162364 - 45161971
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||  |    
T  45162364 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat----gtttgatga 45162269  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 358  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  45162268 tgcttgagtat---------gccaaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatctagaaacaa 45162178  T
Q  359 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 458  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |     
T  45162177 agaaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttagtagtgtctagtagcttt 45162078  T
Q  459 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattt 558  Q
    |||||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||| ||||||||   | ||||||||| |||||||||||||     
T  45162077 cttattattccctagtattctaaagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattc 45161978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 161 - 569
Target Start/End: Complemental strand, 45167254 - 45166859
Alignment:
Q  161 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgactatg 260  Q
    ||||| |||||||||||||| ||  |||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    | ||||  |||    
T  45167254 gctcatggacaaaaggaaagttaccgaaaatagagaaacactctaatattcttaaaaaaaagttatattatttgaatgattcaat----gtttgatgatg 45167159  T
Q  261 cttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaag 360  Q
    |||||||||         ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||    
T  45167158 cttgagtat---------gccaaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatctagaaacaaag 45167068  T
Q  361 aaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatcct 460  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  45167067 aaaagtctagagatatggatactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttagtagtgtctagtagcttcct 45166968  T
Q  461 tattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattttt 560  Q
    |||||||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||| ||||||||   | ||||||||| ||||||||||||| ||    
T  45166967 tattattccctagtattctaaagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattctt 45166868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 158 - 529
Target Start/End: Original strand, 42468438 - 42468795
Alignment:
Q  158 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 257  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    ||||||      
T  42468438 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaat----gcttgatg 42468533  T
Q  258 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    |||||| ||||||          ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42468534 atgcttcagtatc----------caaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaaca 42468623  T
Q  358 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcat 457  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |    
T  42468624 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagctt 42468723  T
Q  458 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 529  Q
    ||||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  42468724 ccttattattccccagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 42468795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 159 - 529
Target Start/End: Original strand, 42470768 - 42471124
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    ||||||  |    
T  42470768 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaat----gcttgatga 42470863  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 358  Q
    ||||| ||||||          ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42470864 tgcttcagtatc----------caaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 42470953  T
Q  359 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 458  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||    
T  42470954 agaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttc 42471053  T
Q  459 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 529  Q
    |||||||||||| |||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  42471054 cttattattcccaagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 42471124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 280 - 497
Target Start/End: Original strand, 50855868 - 50856085
Alignment:
Q  280 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatgga 379  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  50855868 ccaaaacactaggtggtgaaccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatgga 50855967  T
Q  380 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattct 479  Q
    |||||| ||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  50855968 tactctggtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccatagtattct 50856067  T
Q  480 agagacttctattttatt 497  Q
    ||||||||| || |||||    
T  50856068 agagacttccatattatt 50856085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 159 - 430
Target Start/End: Original strand, 19429076 - 19429334
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagt-tatattacttgaatgattcaattaatgcttgact 257  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||                
T  19429076 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagtatatattacttgaatgattcaat------------ 19429163  T
Q  258 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
      ||||||||||||||| |||  | ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||    
T  19429164 --gcttgagtatcttgaatatatctaaacacttggtggtgagccttatttatactactctaggtaggctctccattacaaactagaaatatctataaaca 19429261  T
Q  358 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctag 430  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19429262 aagaaaagtctagagatatgaatactctagtacataaaactagaaggatctagaaaagtcaagacttccctag 19429334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 159 - 357
Target Start/End: Complemental strand, 13774336 - 13774151
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||  |    
T  13774336 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatga 13774241  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    ||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  13774240 tg---------cttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 13774151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 283 - 485
Target Start/End: Complemental strand, 8739467 - 8739264
Alignment:
Q  283 aaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggatac 382  Q
    ||||||| |||||| |||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |    
T  8739467 aaacacttggtggtaagccttgtttatacaactctaggaaggctctacattacaaactagaaatatctagaaacaaagaaaaatctagagatatggatgc 8739368  T
Q  383 tctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta--tttagtagtgtctagtagcatccttattattccctagtattcta 480  Q
    |||||| ||||  ||||||||||||||||||  | |||| ||||||||||| ||  |||||| |||| ||||||| ||||||||||||  ||||||||||    
T  8739367 tctagttcatatgactagaaggatctagaaacattaagatttccctagtgcataattttagt-gtgtatagtagcttccttattattcattagtattcta 8739269  T
Q  481 gagac 485  Q
    |||||    
T  8739268 gagac 8739264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 162 - 357
Target Start/End: Complemental strand, 13776630 - 13776449
Alignment:
Q  162 ctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaattaatgcttgactatg 260  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||| | |     
T  13776630 ctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattc----aatgcttgattct- 13776536  T
Q  261 cttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
              |||| | |||| |||||||  | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  13776535 ----------ttgaatgtgcctaaacacttagcggtgagccttatttatactactctaggaaggctctgcattacaaactagaaatatctagaaaca 13776449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 50855771 - 50855857
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  50855771 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcgaggaaaagttatattacttgaatgattcaat 50855857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 421
Target Start/End: Complemental strand, 43179710 - 43179575
Alignment:
Q  295 gtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca---------aagaaaagtctagagatatggatactct 385  Q
    |||||||| |||||||||||||||| ||  |||| ||||| |||||||||||||||| |||||         ||||||||| |||||| |||||||||||    
T  43179710 gtgagcctaatttatactactctagaaaaactctgcattacaaactagaaatatctacaaacattgattacaaagaaaagtatagagacatggatactct 43179611  T
Q  386 agtacataaaactagaaggatctagaaaagtcaaga 421  Q
    ||| ||||  |||||||||||| | |||||| ||||    
T  43179610 agttcatatgactagaaggatccaaaaaagttaaga 43179575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 416
Target Start/End: Original strand, 24908156 - 24908298
Alignment:
Q  282 aaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca--------aagaaaagtctagaga 373  Q
    |||||||| |||||||| || |||||||||||||||||||||| ||  | ||| ||| |||||| || ||||| ||        |||||||||||| |||    
T  24908156 aaaacacttggtggtgaaccctatttatactactctaggaaggttccacgttacaaagtagaaagatgtagaagcatttattacaagaaaagtctaaaga 24908255  T
Q  374 tatggatactctagtacataaaactagaaggatctagaaaagt 416  Q
    |||||||||| |||| ||||  |||| || || ||||||||||    
T  24908256 tatggatactttagttcatatgactaaaaagacctagaaaagt 24908298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 506 - 569
Target Start/End: Original strand, 42468742 - 42468805
Alignment:
Q  506 ttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 569  Q
    |||||||| |||||| ||||||||   | ||||||||| ||||||||||||| |||||||||||    
T  42468742 ttctagagtcttccatattattcttcaccattctagagacttccatattattcttcatcattct 42468805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 8739562 - 8739501
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 220  Q
    ||||||||||| ||||||||||  |||||||||  |||||| ||||||| ||||||| ||||    
T  8739562 tggctcagggataaaaggaaagaaagagaaaataaagaaactctctaatgttctcaaggaaa 8739501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 159 - 569
Target Start/End: Complemental strand, 31487069 - 31486671
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgact 257  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||                
T  31487069 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat------------ 31486982  T
Q  258 atgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaac 356  Q
      |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  31486981 --gcttgattatcttgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctggaaac 31486884  T
Q  357 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagca 456  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  31486883 aaagaaaagtccagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagct 31486784  T
Q  457 tccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattat 556  Q
    ||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||| |||||||||||||| ||  |||||||||||||||||||||||    
T  31486783 tccttattattccctagtattctagagacttctatattattctctagtcttctagaggcttccacattattccctagtattctagagtcttccatattat 31486684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 157 - 569
Target Start/End: Complemental strand, 31489355 - 31488955
Alignment:
Q  157 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttga 255  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||              
T  31489355 tttggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat---------- 31489266  T
Q  256 ctatgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa 354  Q
        |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||    
T  31489265 ----gcttgattatcttgagtatgccaaaacacttaggtggtgagccttatttatactactttaggaaggctctccattacaaactagaaatatctggaa 31489170  T
Q  355 acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtag 454  Q
    ||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  31489169 acaaagaaaagtccagagatatggatactctagtacataagcttagaaggatctagaaaagctaagacttccctagtgcttatttagtagtgtctagtag 31489070  T
Q  455 catccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatatt 554  Q
    | ||||||||||||||||||||||||||||||||||| ||||| |||||| || |||||||||||||||||||| ||  |||||||||||||||||||||    
T  31489069 cttccttattattccctagtattctagagacttctatattattctttagtcttttagagacttccacattattccctagtattctagagtcttccatatt 31488970  T
Q  555 atttttcatcattct 569  Q
    ||| |||| ||||||    
T  31488969 attcttcaccattct 31488955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 270 - 557
Target Start/End: Complemental strand, 29802067 - 29801774
Alignment:
Q  270 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtcta 369  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||||||    
T  29802067 cttgactatgcctaaacacttggtggtgagccttatttatactactctaggaagactccccattacaaactagaaatatctacaaacaaagaaaagtcta 29801968  T
Q  370 gagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta--tttagtagtgtctagtagc----atccttat 463  Q
    ||||||||||| || |||| ||||  ||||||||||| ||||||  | |||| ||  | ||||||||  ||||| |||||||||||||     |||||||    
T  29801967 gagatatggatgctatagttcatatgactagaaggatttagaaacattaagatttttccagtgcttaattttag-agtgtctagtagctagattccttat 29801869  T
Q  464 tattccctagtattctagagacttctattttattatttagtgttctagagacttccacatta-ttctctgctattctagagtcttccatattatt 557  Q
    |||||  |||||||||||| |||||  | ||||| ||| |||||||||||||||||| |||| || | |  |||||||||| |||||||||||||    
T  29801868 tattctttagtattctagatacttccctattattctttggtgttctagagacttccatattatttttttattattctagagacttccatattatt 29801774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 159 - 357
Target Start/End: Original strand, 42275556 - 42275739
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    ||| ||||| |     
T  42275556 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatacttgattc 42275651  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    |           |||| | |||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  42275652 t-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 42275739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 159 - 357
Target Start/End: Original strand, 42277782 - 42277965
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |     
T  42277782 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgattc 42277877  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    |           |||| | |||| |||||||  |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  42277878 t-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaagactctacattacaaactagaaatatctagaaaca 42277965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 158 - 567
Target Start/End: Complemental strand, 23860188 - 23859767
Alignment:
Q  158 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 257  Q
    |||||||||||||||||||||| | | ||||||| ||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||                
T  23860188 ttggctcagggacaaaaggaaaagcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaat------------ 23860101  T
Q  258 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa--- 354  Q
      ||||||||||||||| ||| |  ||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||       
T  23860100 --gcttgagtatcttgaatatacgtaaacacttggtggtgagccttatttatactactctaggaaggctctacattacaaactagaattatctagaaata 23860003  T
Q  355 ------acaaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtg-----------cttat 437  Q
          ||||||||| | ||||| | ||| |||||||||| ||||| ||||||||||||||||||||  |||| ||| ||||||            ||||    
T  23860002 ttgattacaaagaaaggcctagaaacatgcatactctagttcataagactagaaggatctagaaaagctaagatttctctagtgtctaattttattttat 23859903  T
Q  438 ttagtag--tgtctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagag----acttccacattattctct 531  Q
    |||||||  ||| ||||||| ||||||||||| | |||||||||||||||| | || ||||| |||||||||||||||    | ||||| |||||||  |    
T  23859902 ttagtagaatgtttagtagcttccttattatttcatagtattctagagactcccatattattctttagtgttctagaggcttaattccatattattcatt 23859803  T
Q  532 gctattctagagtcttccatattatttttcatcatt 567  Q
      ||||||||||| ||||||||  || |||||||||    
T  23859802 agtattctagagtgttccatatctttcttcatcatt 23859767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 277 - 529
Target Start/End: Original strand, 34576694 - 34576969
Alignment:
Q  277 atgccaaaacactaggtggtgagccttatttatactactct-aggaaggctctccattataaactagaaatatctagaa---------acaaagaaaagt 366  Q
    ||||| ||||||| | ||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||||||         ||||||||||||    
T  34576694 atgcctaaacacttgatggtgagccttatttatactaatcttaggaaggctctacattacaaactagaaatatctagaaacattgattacaaagaaaagt 34576793  T
Q  367 ctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgc-----------ttatttagt--agtgtctagta 453  Q
    ||||||| ||| |||||||||| ||||  ||||||||||||||||||||| |||| ||| |||||||           |||||||||  |||||| ||||    
T  34576794 ctagagacatgaatactctagttcatatgactagaaggatctagaaaagttaagatttctctagtgcgtaattttattttatttagtagagtgtccagta 34576893  T
Q  454 gcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 529  Q
    || ||||  ||||||  ||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||    
T  34576894 gcttcctcgttattctttagtattttagagacttccatattattctttagtgttctagagacttccacattattct 34576969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 5164151 - 5164237
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5164151 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaat 5164237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 8995076 - 8995156
Alignment:
Q  165 agggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8995076 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagttatattacttgaatgattcaat 8995156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 15730093 - 15730013
Alignment:
Q  165 agggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  15730093 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaataaaagttatattacttgaatgattcaat 15730013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 39816089 - 39816151
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaa 221  Q
    ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  39816089 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 39816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 34576612 - 34576665
Alignment:
Q  167 ggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 220  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  34576612 ggacaaaaggtaaggtagagaaaatagagaaactctctaatattctcaaagaaa 34576665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 15729981 - 15729871
Alignment:
Q  458 ccttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatt 557  Q
    |||||||||||  ||||||||||||||||||  |  |||| |||  ||| |||||||||||||||||||||| |  | |||||||| | |||||||||||    
T  15729981 ccttattattctttagtattctagagacttccttaatattcttttatgt-ctagagacttccacattattctttattgttctagagacatccatattatt 15729883  T
Q  558 tttcatcattct 569  Q
     |||||||||||    
T  15729882 cttcatcattct 15729871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 8995169 - 8995210
Alignment:
Q  281 caaaacactaggtggtgagccttatttatactactctaggaa 322  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  8995169 caaaacacttggtggagagccttatttatactactctaggaa 8995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 493 - 569
Target Start/End: Original strand, 34576903 - 34576979
Alignment:
Q  493 ttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 569  Q
    ||||| |||||| || |||||||||||| |||||||| |  | |||||||| |||||| |||||| |||||||||||    
T  34576903 ttattctttagtattttagagacttccatattattctttagtgttctagagacttccacattattcttcatcattct 34576979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 493 - 560
Target Start/End: Complemental strand, 29801869 - 29801802
Alignment:
Q  493 ttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattttt 560  Q
    ||||| |||||| ||||||| ||||||  |||||||| || | |||||||| ||||||||||||||||    
T  29801869 ttattctttagtattctagatacttccctattattctttggtgttctagagacttccatattattttt 29801802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 237; Significance: 1e-130; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 159 - 569
Target Start/End: Original strand, 11852175 - 11852561
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |    
T  11852175 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattca----atgcttgacga 11852270  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 358  Q
    |                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  11852271 t--------------------ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaa 11852350  T
Q  359 agaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatc 458  Q
    | ||||||||||||||||||||||||||||||||||  ||||||||  |||||||||| | |||||||||||||||||||||||||||||||||||| ||    
T  11852351 ataaaagtctagagatatggatactctagtacataagcctagaaggtcctagaaaagttatgacttccctagtgcttatttagtagtgtctagtagcttc 11852450  T
Q  459 cttattattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattattt 558  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||   |  ||||||||||||||||||||||||     
T  11852451 cttattattccctagtattctagagacttctatattattctttagtcttctagagacttcctcattatttcatagtattctagagtcttccatattattc 11852550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 281 - 569
Target Start/End: Complemental strand, 37207948 - 37207660
Alignment:
Q  281 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggat 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  37207948 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggat 37207849  T
Q  381 actctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattcta 480  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37207848 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattcta 37207749  T
Q  481 gagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 569  Q
     |||||||||| ||||| |||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||    
T  37207748 cagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattattcttcatcattct 37207660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 280 - 569
Target Start/End: Original strand, 23164347 - 23164636
Alignment:
Q  280 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatgga 379  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  23164347 ccaaaacactaggtggtgggccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatgga 23164446  T
Q  380 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattct 479  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  23164447 tactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgtttatttagtagtgtctagtagcttccttattattccctagtattct 23164546  T
Q  480 agagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 569  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||| ||||||    
T  23164547 agagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattattcttcaccattct 23164636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 280 - 569
Target Start/End: Complemental strand, 22600989 - 22600700
Alignment:
Q  280 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatgga 379  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  22600989 ccaaaacactaggtggtgagccttatttatactactttagcaagactctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatgga 22600890  T
Q  380 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattct 479  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||||    
T  22600889 tactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtcaagtagctttcttattattccatagtattct 22600790  T
Q  480 agagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 569  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||    
T  22600789 agagacttctatattattatttagtcttctagagacttccacattattccctaatattctagagtcttccatattattcttcatcattct 22600700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 280 - 569
Target Start/End: Original strand, 11850014 - 11850303
Alignment:
Q  280 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatgga 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  11850014 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatgga 11850113  T
Q  380 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcatccttattattccctagtattct 479  Q
    |||||| ||||||||  |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |    
T  11850114 tactcttgtacataagcctagaaggatctagaaaatttaagacttccctagtgcttatttagtagtgtctagtagctttcttattattccctagtatttt 11850213  T
Q  480 agagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 569  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||||||  |  ||||| |||||||||||||||||| |||| ||||||    
T  11850214 agagacttctatattattctttagtcttctagagacttccacattattccatagtattcaagagtcttccatattattcttcaccattct 11850303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 281 - 424
Target Start/End: Complemental strand, 37215539 - 37215396
Alignment:
Q  281 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggat 380  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| |||||| ||||||    
T  37215539 caaaacactatgtggtgagccttatttatactactctaggaaggctcttcattaccaactagaaatatctagaaacaaagaaaagtttagagacatggat 37215440  T
Q  381 actctagtacataaaactagaaggatctagaaaagtcaagactt 424  Q
    ||||||||| ||||  |||||||||||||||||||| |||||||    
T  37215439 actctagtatataagcctagaaggatctagaaaagttaagactt 37215396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 281 - 529
Target Start/End: Original strand, 1779316 - 1779581
Alignment:
Q  281 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca---------aagaaaagtctaga 371  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||         |||||| | |||||    
T  1779316 caaaacacttgttggtgagccttatttataccactctaggaaggctctacattacaaactagaattatctagaaacattgattacaaagaaaggcctaga 1779415  T
Q  372 gatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt------atttagt--agtgtctagtagcatccttat 463  Q
     | |||||||||||||| ||||  ||||||||||||||||||  | |||| ||  |||||||||      |||||||  ||||||||||||| |||||||    
T  1779416 aacatggatactctagttcatatgactagaaggatctagaaacattaagatttttctagtgctttattttatttagtggagtgtctagtagcttccttat 1779515  T
Q  464 tattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 529  Q
    |||||| ||||||| ||||||||||||| ||||| |||||| ||||||| ||||||| ||||||||    
T  1779516 tattccatagtattttagagacttctatattattctttagttttctagaaacttccatattattct 1779581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 11849916 - 11850003
Alignment:
Q  158 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11849916 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattcaat 11850003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 23164254 - 23164340
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23164254 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 23164340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 22601088 - 22601000
Alignment:
Q  158 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaat 245  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||    
T  22601088 ttggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaat 22601000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 37215638 - 37215551
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaat 245  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||    
T  37215638 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaat 37215551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 1779222 - 1779303
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    |||||||||||||||||||||     ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1779222 tggctcagggacaaaaggaaa-----agaaaatagaggaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 1779303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 318 - 569
Target Start/End: Original strand, 1779587 - 1779855
Alignment:
Q  318 aggaaggctctccattataaactagaaatatctagaaaca---------aagaaaagtctagagatatggatactctagtacataaaactagaaggatct 408  Q
    ||||||||| | ||||| ||||||||||||||||||||||         | |||| | ||||||||| ||||| |||||| ||||  |||||||||||||    
T  1779587 aggaaggctttacattacaaactagaaatatctagaaacattgattacaaggaaaggcctagagatagggatattctagttcatatgactagaaggatct 1779686  T
Q  409 agaaaagtcaagacttccctagtgctt-attt-----agtag--tgtctagtagcatccttattattccctagtattctagagacttctattttattatt 500  Q
    |||||  | |||| |||||||| |||| ||||     |||||  ||||||||||| ||   |||||||  |||||||||||||||||| || ||||| ||    
T  1779687 agaaacattaagatttccctagcgctttattttatccagtagaatgtctagtagcttcgacattattctttagtattctagagacttccatattattctt 1779786  T
Q  501 tagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 569  Q
    ||||||| | |||||||||||||| |||| |  |||||||  | ||||||||||||| |||||||||||    
T  1779787 tagtgttatggagacttccacatttttctttagtattctaaggacttccatattattcttcatcattct 1779855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 21743797 - 21743719
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaat 237  Q
    |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||| ||||||    
T  21743797 tggcccagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaagtttatattatttgaat 21743719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 37208070 - 37207998
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatatta 230  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||    
T  37208070 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcgaagaaaagattatatta 37207998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 21743709 - 21743622
Alignment:
Q  270 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    |||||||||||| || |||| ||||||||  |||||||||||||||||||||||||||| || || |||||| ||||||||| |||||    
T  21743709 cttgagtatgcctaaccacttggtggtgaatcttatttatactactctaggaaggctctacactacaaactaaaaatatctaaaaaca 21743622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 15469258 - 15469197
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 220  Q
    ||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  15469258 tggctcagggacaaaaggaaaggtaaaaaaaatagagaaactctctaatattctcaaagaaa 15469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 1779181 - 1779221
Alignment:
Q  283 aaacactaggtggtgagccttatttatactactctaggaag 323  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  1779181 aaacacttggtggtgagccttatttatactactctaggaag 1779221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 462 - 529
Target Start/End: Complemental strand, 37207707 - 37207640
Alignment:
Q  462 attattccctagtattctagagacttctattttattatttagtgttctagagacttccacattattct 529  Q
    |||||||||||||||||||||| |||| || ||||| || |   ||||||||||||||| ||||||||    
T  37207707 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattct 37207640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 167; Significance: 7e-89; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 167; E-Value: 7e-89
Query Start/End: Original strand, 159 - 394
Target Start/End: Complemental strand, 1801 - 1579
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    ||||||  |    
T  1801 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatatcctcaaagaaaagttatattacttgaatgattcaat----gcttgatga 1706  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaa 358  Q
    |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1705 tgcttgagtat---------gccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaa 1615  T
Q  359 agaaaagtctagagatatggatactctagtacataa 394  Q
    ||||||||||||||||||||||||||||||||||||    
T  1614 agaaaagtctagagatatggatactctagtacataa 1579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 2e-64; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 159 - 357
Target Start/End: Complemental strand, 4531020 - 4530835
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 258  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||  |    
T  4531020 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatga 4530925  T
Q  259 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaaca 357  Q
    ||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  4530924 tg---------cttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 4530835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 158 - 351
Target Start/End: Complemental strand, 4533318 - 4533138
Alignment:
Q  158 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 257  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||      
T  4533318 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatg 4533223  T
Q  258 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatcta 351  Q
    |||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  4533222 atg---------cttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatcta 4533138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 283 - 565
Target Start/End: Original strand, 18966221 - 18966518
Alignment:
Q  283 aaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctagagatatggatac 382  Q
    ||||||| ||||||||||||||||||||||||||||||||| | |||||| | | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  18966221 aaacacttggtggtgagccttatttatactactctaggaagacactccatgacacactagaaatatctagaaaccaagaaaagtcaagagatatggatac 18966320  T
Q  383 tctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctt-----------atttagt--agtgtctagtagcatccttattattcc 469  Q
    |||||||| ||  ||||||||||||||||||  | |||| || ||||||||||           |||||||  ||| |||||||||  ||||||||||      
T  18966321 tctagtacgtatgactagaaggatctagaaacattaagattttcctagtgcttaattttatttcatttagtagagtatctagtagctaccttattattat 18966420  T
Q  470 ctagtattctagagacttctattttattatttagtgttctagagacttccacattattctctgctattct--agagtcttccatattatttttcatca 565  Q
    |||||||||||||||||||  | ||||| ||| ||||||||||||||||||||||||||| |  ||||||  |||| ||||||||||||| |||||||    
T  18966421 ctagtattctagagacttccctattattctttggtgttctagagacttccacattattctttagtattctagagagacttccatattattcttcatca 18966518  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 357 - 432
Target Start/End: Complemental strand, 1701179 - 1701104
Alignment:
Q  357 aaagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtg 432  Q
    ||||||||| ||||| ||||||||| |||| | ||||  ||||||||||||||||||||| |||| ||||||||||    
T  1701179 aaagaaaagcctagaaatatggataatctaattcatatgactagaaggatctagaaaagttaagatttccctagtg 1701104  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 358 - 414
Target Start/End: Complemental strand, 8535578 - 8535522
Alignment:
Q  358 aagaaaagtctagagatatggatactctagtacataaaactagaaggatctagaaaa 414  Q
    |||||||||||||||||||||||||| ||||  |||  |||||||||||||| ||||    
T  8535578 aagaaaagtctagagatatggatactttagtttatatgactagaaggatctaaaaaa 8535522  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 493 - 565
Target Start/End: Complemental strand, 39578307 - 39578235
Alignment:
Q  493 ttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatca 565  Q
    ||||| |||||||||||  | |||| ||||||||||| |  |||||||||||||||||||| ||| |||||||    
T  39578307 ttattctttagtgttctgtaaactttcacattattctttagtattctagagtcttccatatcattcttcatca 39578235  T

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Target: scaffold0050 (Bit Score: 99; Significance: 3e-48; HSPs: 6)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 270 - 436
Target Start/End: Complemental strand, 29426 - 29261
Alignment:
Q  270 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtcta 369  Q
    |||||||||||| |  |||| ||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||    
T  29426 cttgagtatgcctacgcacttggtggtgagccttatttatactactctaggaagactctccattacaaactaaaaatatctagaaac-aagaaaagtcta 29328  T
Q  370 gagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta 436  Q
    |||||||||||  |||||||||||  ||||||||||||||||||  | |||| ||||||||||||||    
T  29327 gagatatggatgttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 29261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 270 - 436
Target Start/End: Complemental strand, 31741 - 31574
Alignment:
Q  270 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtcta 369  Q
    |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||    
T  31741 cttgagtatgcctacacacttggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctaaaaac-aagaaaagtcta 31643  T
Q  370 gag--atatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgctta 436  Q
    |||  ||||||||  |||||||||||  ||||||||||||||||||  | |||| ||||||||||||||    
T  31642 gagatatatggatgttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 31574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 29514 - 29453
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 220  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  29514 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 29453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 31829 - 31768
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 220  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  31829 tggctcaaggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 31768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 482 - 570
Target Start/End: Complemental strand, 31527 - 31439
Alignment:
Q  482 agacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattctt 570  Q
    ||||||| || ||||| || ||||||||||||||||||||||| |||| |  | || |||||  |||||||||||| ||||||||||||    
T  31527 agacttccatattattcttgagtgttctagagacttccacattgttctttagtgttttagagagttccatattattcttcatcattctt 31439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 482 - 569
Target Start/End: Complemental strand, 29209 - 29122
Alignment:
Q  482 agacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatcattct 569  Q
    ||||||| || ||||| || | ||||||||||||||||||||| |||| |  | || ||||| ||||||||||||| |||||||||||    
T  29209 agacttccatattattcttgaatgttctagagacttccacattgttctttagtgttttagagacttccatattattcttcatcattct 29122  T

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Target: scaffold0008 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 88531 - 88445
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 245  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  88531 tggctcagggacaaaaggaaaggtagagaaaatagagaaagactctaatattctcaaagaaaagttatattacttgaatgattcaat 88445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 481 - 565
Target Start/End: Complemental strand, 73153 - 73069
Alignment:
Q  481 gagacttctattttattatttagtgttctagagacttccacattattctctgctattctagagtcttccatattatttttcatca 565  Q
    ||||||||||| ||||| |||||| ||||||||||||||| ||||||||   | ||||||||| ||||||||||||| |||||||    
T  73153 gagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattcttcatca 73069  T

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Target: scaffold1361 (Bit Score: 72; Significance: 4e-32; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 140 - 53
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaat 245  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  140 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactttaatattctcaaacgaaaagttatattacttgaatgattcaat 53  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 55; Significance: 5e-22; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 3707 - 3785
Alignment:
Q  159 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaat 237  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||  |||||||| ||||||    
T  3707 tggctcagggacaaaaggaaaggtagagaaaatagagtaactctctaatattctcaaagaaagtttatattatttgaat 3785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 8e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 291 - 497
Target Start/End: Complemental strand, 21199374 - 21199149
Alignment:
Q  291 ggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaa---------acaaagaaaagtctagag--atatgga 379  Q
    |||||||| ||||||||||| ||||| ||||||||| | ||||| |||||||||||||||||||         |||| |||| | ||||||  |||||||    
T  21199374 ggtggtgaaccttatttatagtactccaggaaggctgtacattacaaactagaaatatctagaaacattgattacaatgaaaggcctagagacatatgga 21199275  T
Q  380 tactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgc------ttatttagt--agtgtctagtagcatccttattattccct 471  Q
    ||||| ||| ||||  ||||||||||||||||||  | |||| ||  |||||||      |||||||||  ||||| ||||||| ||||||||||||| |    
T  21199274 tactccagttcatatgactagaaggatctagaaacattaagatttaactagtgctttattttatttagtagagtgtatagtagcttccttattattccat 21199175  T
Q  472 agtattctagagacttctattttatt 497  Q
    ||||||||||||||||| || |||||    
T  21199174 agtattctagagacttccatattatt 21199149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 20642359 - 20642300
Alignment:
Q  161 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 220  Q
    |||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||||    
T  20642359 gctcagggacaaaatgaaaggtagagaaaatagagaaattctctaatattctcaaagaaa 20642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 11358 - 11287
Alignment:
Q  447 tctagtagcatccttattattccctagtattctagagacttctattttattatttagtgttctagagacttc 518  Q
    ||||||||| ||||||||||||  ||  ||| |||||||||| || ||||| ||||||||||||||||||||    
T  11358 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagagacttc 11287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 64144 - 64082
Alignment:
Q  156 atttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 220  Q
    |||||| |||| ||||||| |||||||| ||||||| ||||||| ||  ||||||||||||||||    
T  64144 atttggatcagagacaaaatgaaaggtaaagaaaatagagaaaccct--aatattctcaaagaaa 64082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 71476 - 71414
Alignment:
Q  156 atttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 220  Q
    |||||| |||| ||||||| |||||||| ||||||| ||||||| ||  ||||||||||||||||    
T  71476 atttggatcagagacaaaatgaaaggtaaagaaaatagagaaaccct--aatattctcaaagaaa 71414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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