View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12339_low_3 (Length: 404)

Name: NF12339_low_3
Description: NF12339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12339_low_3
NF12339_low_3
[»] chr3 (12 HSPs)
chr3 (34-310)||(30486974-30487250)
chr3 (150-310)||(30518260-30518420)
chr3 (55-152)||(30516954-30517051)
chr3 (54-141)||(30490930-30491017)
chr3 (54-141)||(30523455-30523542)
chr3 (45-140)||(30507809-30507904)
chr3 (181-252)||(30505092-30505163)
chr3 (164-270)||(30520060-30520167)
chr3 (193-273)||(30521956-30522041)
chr3 (181-270)||(30485599-30485691)
chr3 (151-273)||(30506515-30506642)
chr3 (181-245)||(30502661-30502726)
[»] chr2 (1 HSPs)
chr2 (204-252)||(29265212-29265261)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 34 - 310
Target Start/End: Original strand, 30486974 - 30487250
Alignment:
Q  34 attggagagaaattaggatgtggttttgcaatgttttgttaaaaaattaaaatgataaaaggaggatgaagctgaagggagagctgcaaacttgtgttca 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30486974 attggagagaaattaggatgtggttttgcaatgttttgttaaaaaattaaaatgataaaaggaggatgaagctgaagggagagctgcaaacttgtgttca 30487073  T
Q  134 ttgtgggagttctatataagcgtggattatattcactgttctttgtcttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagaga 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30487074 ttgtgggagttctatataagcgtgggttatattcactgttctttgtcttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagaga 30487173  T
Q  234 ggctttagtgggaaataccaattcaatcagaaaatcagaatctcgcctgaaattggctctaacttctttcaaaatcc 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30487174 ggctttagtgggaaataccaattcaatcagaaaatcagaatctcgcctgaaattggctctaacttctttcaaaatcc 30487250  T

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Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 150 - 310
Target Start/End: Original strand, 30518260 - 30518420
Alignment:
Q  150 taagcgtggattatattcactgttctttgtcttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagagaggctttagtgggaaat 249  Q
    |||| |||| ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30518260 taagtgtgggttatattcactgttcttcgccttcagctgttttgctgaatgtagaaagaaaagggctatgattacaatgagagaggctctagtgggaaat 30518359  T
Q  250 accaattcaatcagaaaatcagaatctcgcctgaaattggctctaacttctttcaaaatcc 310  Q
    ||||| |||| | |||||| ||||||||||||||||| ||||||||||||  |||||||||    
T  30518360 accaactcaagcggaaaattagaatctcgcctgaaatcggctctaacttccatcaaaatcc 30518420  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 30516954 - 30517051
Alignment:
Q  55 ggttttgcaatgttttgttaaaaaattaaaatgataaaaggaggatgaagctgaagggagagctgcaaacttgtgttcattgtgggagttctatataa 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||| | ||||||||    
T  30516954 ggttttgcaatgttttgttaaaaaattaaaatgataaaaggaggatgaatctgaagtgagagctgtaaacttttgttcattgtgggaatactatataa 30517051  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 30490930 - 30491017
Alignment:
Q  54 tggttttgcaatgttttgttaaaaaattaaaatgataaaaggaggatgaagctgaagggagagctgcaaacttgtgttcattgtggga 141  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||    
T  30490930 tggttttgcaatcttttgttaaaaaagtaaaatgataaaaggaggatgaaggtggagtgagagctgcaaacttgtgttgattgtggga 30491017  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 30523455 - 30523542
Alignment:
Q  54 tggttttgcaatgttttgttaaaaaattaaaatgataaaaggaggatgaagctgaagggagagctgcaaacttgtgttcattgtggga 141  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||    
T  30523455 tggttttgcaatcttttgttaaaaaagtaaaatgataaaaggaggatgaaggtggagtgagagctgcaaacttgtgttgattgtggga 30523542  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 30507809 - 30507904
Alignment:
Q  45 attaggatgtggttttgcaatgttttgttaaaaaattaaaatgataaaaggaggatgaagctgaagggagagctgcaaacttgtgttcattgtggg 140  Q
    |||||||  |||||||||||| ||||| ||||||| |||||||||||||||||||||||| || || |||||||||||||||||||| ||||||||    
T  30507809 attaggaaatggttttgcaatcttttgctaaaaaagtaaaatgataaaaggaggatgaaggtggagcgagagctgcaaacttgtgttgattgtggg 30507904  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 30505092 - 30505163
Alignment:
Q  181 ttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagagagg-ctttagtgggaaatacc 252  Q
    ||||||| |||||||||| ||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||    
T  30505092 ttcagctgttttgctgaaagtagaaa-aaaggggcgatgattacaatgagagaggtctttagtgggaaatacc 30505163  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 30520060 - 30520167
Alignment:
Q  164 attcactgttctttgtcttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagagagg-ctttagtgggaaata-ccaattcaatc 261  Q
    ||||| ||||| |||  ||||||| |||||||||| ||||||| ||  |||| ||||||||||||||||||| || |||||||||||| |||||| ||||    
T  30520060 attcattgttcattgctttcagctgttttgctgaaggtagaaa-aatggggcgatgattacaatgagagaggtctgtagtgggaaatacccaatttaatc 30520158  T
Q  262 agaaaatca 270  Q
     ||||||||    
T  30520159 ggaaaatca 30520167  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 30521956 - 30522041
Alignment:
Q  193 gctgaatgtagaaagaaaagggctatgattacaatgagagagg-ctttagtgggaaata----ccaattcaatcagaaaatcagaa 273  Q
    |||||| ||| ||||||| |||| ||||||| ||||||||||| |||||||||||||||    ||||||||||| |||||||||||    
T  30521956 gctgaaggtaaaaagaaaggggccatgattataatgagagaggcctttagtgggaaataatacccaattcaatcggaaaatcagaa 30522041  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 30485599 - 30485691
Alignment:
Q  181 ttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagaga---ggctttagtgggaaata-ccaattcaatcagaaaatca 270  Q
    ||||||| |||||||||| ||||||| ||  |||| |||||||||||||||||   | ||||||||||||||| |||||| | |||||||||||    
T  30485599 ttcagctgttttgctgaaagtagaaa-aatggggcaatgattacaatgagagagaggtctttagtgggaaatacccaatttattcagaaaatca 30485691  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 273
Target Start/End: Original strand, 30506515 - 30506642
Alignment:
Q  151 aagcgtggattatattcactgttctttgtcttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagagaggc-tttagtgggaaat 249  Q
    |||||||| ||| ||||| ||||| |||  |||||||  |||| |||| ||| |||||||||||  || |||| || ||||||||| |||||||||||||    
T  30506515 aagcgtgggttagattcattgttcattgctttcagctgatttgatgaaggtataaagaaaagggagattattataacgagagaggcctttagtgggaaat 30506614  T
Q  250 ac----caattcaatcagaaaatcagaa 273  Q
    |     |||||||||| |||||||||||    
T  30506615 aataatcaattcaatcggaaaatcagaa 30506642  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 30502661 - 30502726
Alignment:
Q  181 ttcagctattttgctgaatgtagaaagaaaagggctatgattacaatgagagagg-ctttagtggg 245  Q
    ||||||| |||||| ||| |||  ||||||||||| |||||||||| |||||||| ||||||||||    
T  30502661 ttcagctgttttgccgaaggtattaagaaaagggcgatgattacaacgagagaggcctttagtggg 30502726  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 29265212 - 29265261
Alignment:
Q  204 aaagaaaagggctatgattacaatgagagagg-ctttagtgggaaatacc 252  Q
    ||||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  29265212 aaagaaaggggcgatgattacaatgagagaggcctttagtgggaaatacc 29265261  T

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