View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12339_low_8 (Length: 209)

Name: NF12339_low_8
Description: NF12339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12339_low_8
NF12339_low_8
[»] chr6 (48 HSPs)
chr6 (15-194)||(26048643-26048822)
chr6 (15-194)||(26069812-26069991)
chr6 (15-192)||(25538338-25538515)
chr6 (15-192)||(26142663-26142840)
chr6 (15-192)||(25481540-25481717)
chr6 (15-192)||(26055724-26055901)
chr6 (15-192)||(26075694-26075871)
chr6 (14-192)||(25579514-25579694)
chr6 (14-107)||(27605041-27605135)
chr6 (14-107)||(26655752-26655846)
chr6 (14-107)||(26761723-26761817)
chr6 (14-107)||(27718709-27718803)
chr6 (111-191)||(27611215-27611295)
chr6 (111-191)||(27718592-27718672)
chr6 (111-191)||(28781033-28781113)
chr6 (111-191)||(28786172-28786252)
chr6 (111-191)||(28792293-28792373)
chr6 (14-107)||(27698824-27698916)
chr6 (111-191)||(26802336-26802416)
chr6 (15-107)||(27725175-27725267)
chr6 (31-107)||(28780920-28780996)
chr6 (31-107)||(28786059-28786135)
chr6 (33-100)||(27611339-27611406)
chr6 (30-107)||(26823626-26823703)
chr6 (115-192)||(26861514-26861591)
chr6 (111-192)||(27604917-27604998)
chr6 (111-191)||(26655883-26655963)
chr6 (111-191)||(26761854-26761934)
chr6 (111-191)||(27229126-27229206)
chr6 (111-191)||(27531410-27531490)
chr6 (111-191)||(27698707-27698787)
chr6 (111-191)||(27725058-27725138)
chr6 (35-107)||(28792184-28792256)
chr6 (112-191)||(27338278-27338357)
chr6 (112-191)||(27399018-27399097)
chr6 (111-191)||(26622870-26622950)
chr6 (111-191)||(26728848-26728928)
chr6 (115-191)||(27593233-27593309)
chr6 (115-191)||(27678844-27678920)
chr6 (40-107)||(31284078-31284145)
chr6 (30-107)||(27229014-27229089)
chr6 (115-192)||(26646377-26646454)
chr6 (115-192)||(26752345-26752422)
chr6 (14-107)||(26802201-26802299)
chr6 (115-191)||(31284186-31284262)
chr6 (52-107)||(27678748-27678803)
chr6 (52-106)||(27706733-27706787)
chr6 (115-191)||(27677827-27677903)
[»] scaffold0349 (5 HSPs)
scaffold0349 (14-107)||(8131-8225)
scaffold0349 (14-107)||(14685-14777)
scaffold0349 (15-107)||(3752-3844)
scaffold0349 (111-191)||(3635-3715)
scaffold0349 (111-191)||(14568-14648)
[»] scaffold0277 (4 HSPs)
scaffold0277 (111-191)||(4884-4964)
scaffold0277 (111-191)||(13845-13925)
scaffold0277 (31-107)||(13962-14038)
scaffold0277 (35-107)||(5001-5073)
[»] chr4 (10 HSPs)
chr4 (111-191)||(18724285-18724365)
chr4 (111-191)||(18679767-18679847)
chr4 (37-107)||(18699717-18699787)
chr4 (111-191)||(18655677-18655757)
chr4 (37-107)||(18655794-18655864)
chr4 (37-107)||(18679884-18679954)
chr4 (37-107)||(18731821-18731891)
chr4 (111-191)||(18699600-18699680)
chr4 (111-191)||(18731704-18731784)
chr4 (79-107)||(18724402-18724430)
[»] scaffold1254 (2 HSPs)
scaffold1254 (111-191)||(130-210)
scaffold1254 (14-105)||(249-334)
[»] scaffold0419 (2 HSPs)
scaffold0419 (111-191)||(7419-7499)
scaffold0419 (14-105)||(7295-7380)
[»] chr1 (3 HSPs)
chr1 (58-103)||(28127995-28128040)
chr1 (111-192)||(28164561-28164642)
chr1 (111-143)||(28127928-28127960)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 48)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 26048643 - 26048822
Alignment:
Q  15 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  26048643 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcccgagtg 26048742  T
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatttg 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26048743 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttg 26048822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 26069812 - 26069991
Alignment:
Q  15 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  26069812 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcccgagtg 26069911  T
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatttg 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26069912 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttg 26069991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 25538338 - 25538515
Alignment:
Q  15 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25538338 acagaccacacaaattaatcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcccgagtg 25538437  T
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatt 192  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  25538438 ttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaatt 25538515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 26142663 - 26142840
Alignment:
Q  15 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  26142663 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcccgagtg 26142762  T
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatt 192  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  26142763 ttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaatt 26142840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 25481540 - 25481717
Alignment:
Q  15 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  25481540 acagaccacacaaattactcattcatattctccattttcaaagttttttttcatccaaattctttcaattctcatggctatgcaatcaccttccagagtg 25481639  T
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatt 192  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25481640 ttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaatt 25481717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 26055724 - 26055901
Alignment:
Q  15 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||    
T  26055724 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcctgagtg 26055823  T
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatt 192  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26055824 ttcctcattttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaatt 26055901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 26075694 - 26075871
Alignment:
Q  15 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||    
T  26075694 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttccagagtg 26075793  T
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatt 192  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26075794 ttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaatt 26075871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 25579514 - 25579694
Alignment:
Q  14 cacagaccacacaaattactcattcatattctccattttcaaagtcttttt--tcatccaaattctttcaattctcatggctatgcaatcaccttctcga 111  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||| |||    
T  25579514 cacagaccacacacattactcattcatattctccattttcaaagtttttttattcatccaaattctttcaattctcatggctatgcaatcaccttcccga 25579613  T
Q  112 gtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatt 192  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  25579614 gtgttcctcagtttcagaggcagtgacactcgcaacacttttaccggtaatctctataaggctcttgttgacaagggaatt 25579694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 27605135 - 27605041
Alignment:
Q  14 cacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    ||||||||||| ||| ||||||||||||||||| |||| ||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||    
T  27605135 cacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttc 27605041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 26655752 - 26655846
Alignment:
Q  14 cacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    ||||||||||| ||| ||||||||||||||||| ||||  |||| ||||||||||||||  |||| ||||||||||||||||| |||||||||||    
T  26655752 cacagaccacaaaaacttactcattcatattctgcattcccaaactcttttttcatccattttctctcaattctcatggctatacaatcaccttc 26655846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 26761723 - 26761817
Alignment:
Q  14 cacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    ||||||||||| ||| ||||||||||||||||| ||||  |||| ||||||||||||||  |||| ||||||||||||||||| |||||||||||    
T  26761723 cacagaccacaaaaacttactcattcatattctgcattcccaaactcttttttcatccattttctctcaattctcatggctatacaatcaccttc 26761817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 27718803 - 27718709
Alignment:
Q  14 cacagaccacacaaatt-actcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||| |||| ||||| ||||||||||||||| |||| ||||| ||||||||||||| | |||| ||||||||||||||||| |||||||||||    
T  27718803 cacagaacacaaaaattcactcattcatattctgcattctcaaactcttttttcatcctatttctctcaattctcatggctatacaatcaccttc 27718709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 27611295 - 27611215
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  27611295 agtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaat 27611215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 27718672 - 27718592
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||||||||| ||||||| |||||||||  ||| ||||||||| |||||||| |||||||||| ||||||||||||    
T  27718672 agtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctcttactgacaagggaat 27718592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 28781033 - 28781113
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  28781033 agtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaat 28781113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 28786172 - 28786252
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  28786172 agtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaat 28786252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 28792293 - 28792373
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  28792293 agtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaat 28792373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 27698916 - 27698824
Alignment:
Q  14 cacagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||| |||| || ||||||||||||||||| |||| ||||| ||||||| ||||| | |||| ||||||||||||||||| |||||||||||    
T  27698916 cacagaacacaaaatttactcattcatattctgcattctcaaactcttttt-catcctatttctctcaattctcatggctatacaatcaccttc 27698824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 26802336 - 26802416
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||||||||| ||||||| |||||||||  ||  |||||| || |||||||| |||||||||||||||||||||||    
T  26802336 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaat 26802416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 27725267 - 27725175
Alignment:
Q  15 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||||||| |||||   |||||||||||| |||| ||||| ||||||||||||| | |||| |||||| |||||||||| |||||||||||    
T  27725267 acagaccacaaaaatttaccattcatattctgcattctcaaactcttttttcatcctatttctctcaattgtcatggctatacaatcaccttc 27725175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 28780920 - 28780996
Alignment:
Q  31 actcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||||||||||||  ||| ||||| ||||||||||||||| |||| |||||| ||||||||||||||| ||||||    
T  28780920 actcattcatattctgaattctcaaactcttttttcatccaatttctctcaattatcatggctatgcaattaccttc 28780996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 28786059 - 28786135
Alignment:
Q  31 actcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||||||||||||  ||| ||||| ||||||||||||||| |||| |||||||| |||||||| |||||||||||    
T  28786059 actcattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttc 28786135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 27611406 - 27611339
Alignment:
Q  33 tcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaat 100  Q
    ||||||||||||| |||| ||||| ||||||||||||||| |||| |||||| |||||||||||||||    
T  27611406 tcattcatattctgcattctcaaactcttttttcatccaatttctctcaattttcatggctatgcaat 27611339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 26823626 - 26823703
Alignment:
Q  30 tactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||||||||||||| |||| ||||| ||||| ||| ||||| |||| |||||||||||||||||||| ||| ||||    
T  26823626 tactcattcatattctgcattctcaaactctttcttcgtccaatttctctcaattctcatggctatgcagtcaacttc 26823703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 26861514 - 26861591
Alignment:
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatt 192  Q
    |||||||||||||| || |||||||||||  |   |||||||||||||||||| |||||||||| |||||||||||||    
T  26861514 ttcctcagtttcagaggaagtgacactcggtatggttttaccggtaatctctacaaggctcttactgacaagggaatt 26861591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 27604998 - 27604917
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatt 192  Q
    ||||||||| ||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||||    
T  27604998 agtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctcttactgacaagggaatt 27604917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 26655883 - 26655963
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||||||||| ||||||| |||||| ||  ||  ||||||||| |||||||| |||||||||||||| ||||||||    
T  26655883 agtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctcttattgataagggaat 26655963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 26761854 - 26761934
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||||||||| ||||||| |||||| ||  ||  ||||||||| |||||||| |||||||||||||| ||||||||    
T  26761854 agtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctcttattgataagggaat 26761934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 27229126 - 27229206
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||| ||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  27229126 agtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctcttactgacaagggaat 27229206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 27531490 - 27531410
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||||||||| ||||||   ||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  27531490 agtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaat 27531410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 27698787 - 27698707
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||| ||||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  27698787 agtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaat 27698707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 27725138 - 27725058
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||| ||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  27725138 agtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaat 27725058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 28792184 - 28792256
Alignment:
Q  35 attcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||||||||  ||| ||||| ||||||||||||||| |||| |||||||| |||||||| |||||||||||    
T  28792184 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttc 28792256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 27338357 - 27338278
Alignment:
Q  112 gtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    |||||||||||||| |||| || ||||||||   ||  ||||||||| |||||||| |||||||||||||||||||||||    
T  27338357 gtgttcctcagttttagggacattgacactctttacggttttaccggcaatctctacaaggctcttattgacaagggaat 27338278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 27399097 - 27399018
Alignment:
Q  112 gtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    |||||||||||||| |||| || ||||||||   ||  ||||||||| |||||||| |||||||||||||||||||||||    
T  27399097 gtgttcctcagttttagggacattgacactctttacggttttaccggcaatctctacaaggctcttattgacaagggaat 27399018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 26622870 - 26622950
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||| |||||||| ||||||||||||||  ||  ||| || || |||||||| |||||||||| ||||||||||||    
T  26622870 agtgttcctaagtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaat 26622950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 26728848 - 26728928
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||| |||||||| ||||||||||||||  ||  ||| || || |||||||| |||||||||| ||||||||||||    
T  26728848 agtgttcctaagtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaat 26728928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 27593309 - 27593233
Alignment:
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    |||||||||||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||||| ||||||||||||    
T  27593309 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaat 27593233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 27678844 - 27678920
Alignment:
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    |||||||||||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||||| ||||||||||||    
T  27678844 ttcctcagtttcagaggaagtgacactcggtacggtttcaccgggaatctctacaaggctcttactgacaagggaat 27678920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 31284078 - 31284145
Alignment:
Q  40 tattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||| |||| ||||| ||||| |||||||| ||||| |||| ||||||||||||||||||| ||||    
T  31284078 tattctgcattctcaaattctttcttcatccatattctctcaaatctcatggctatgcaatcatcttc 31284145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 27229014 - 27229089
Alignment:
Q  30 tactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||||||||||||| |||| | ||| ||||||  ||||||| |||| |||| |||||||||||| |||||||||||    
T  27229014 tactcattcatattctgcattctaaaactctttt--catccaatttctctcaagtctcatggctatacaatcaccttc 27229089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 26646377 - 26646454
Alignment:
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatt 192  Q
    |||||||  ||||||||||||||||||||  ||  |||||| ||  ||||||| |||||||||| |||||||||||||    
T  26646377 ttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaatt 26646454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 26752345 - 26752422
Alignment:
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatt 192  Q
    |||||||  ||||||||||||||||||||  ||  |||||| ||  ||||||| |||||||||| |||||||||||||    
T  26752345 ttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaatt 26752422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 26802201 - 26802299
Alignment:
Q  14 cacagaccacacaaa-ttactcattcatattctccattttcaaagtc----ttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    ||||||||||| ||| ||||||||||||||||| |||| ||||| ||    ||||||||||||| ||||  ||||| ||||||||||||| || |||||    
T  26802201 cacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttttttcatccaatttctcacaattttcatggctatgcagtctccttc 26802299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 31284186 - 31284262
Alignment:
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||| ||||||||||| |||||||||||  |   ||| ||||| |||||||| |||||||||| ||||||||||||    
T  31284186 ttccttagtttcaggggaagtgacactcggtatggtttcaccggcaatctctacaaggctcttactgacaagggaat 31284262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 27678748 - 27678803
Alignment:
Q  52 tcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    ||||| |||||||||||| || |||| | || ||||||||||||||||||||||||    
T  27678748 tcaaactcttttttcatctaatttctctaaaatctcatggctatgcaatcaccttc 27678803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 27706787 - 27706733
Alignment:
Q  52 tcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcacctt 106  Q
    ||||| |||||||||||| || |||| | || |||||||||||||||||||||||    
T  27706787 tcaaactcttttttcatctaatttctctaaaatctcatggctatgcaatcacctt 27706733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 27677903 - 27677827
Alignment:
Q  115 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||| |||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||||  ||||||||||||    
T  27677903 ttcctcaatttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttgatgacaagggaat 27677827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 8225 - 8131
Alignment:
Q  14 cacagaccacacaaatt-actcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||| |||| ||||| ||||||||||||||| |||| ||||| ||||||||||||| | |||| ||||||||||||||||| |||||||||||    
T  8225 cacagaacacaaaaattcactcattcatattctgcattctcaaactcttttttcatcctatttctctcaattctcatggctatacaatcaccttc 8131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 14777 - 14685
Alignment:
Q  14 cacagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||| |||| || ||||||||||||||||| |||| ||||| ||||||| ||||| | |||| ||||||||||||||||| |||||||||||    
T  14777 cacagaacacaaaatttactcattcatattctgcattctcaaactcttttt-catcctatttctctcaattctcatggctatacaatcaccttc 14685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 3844 - 3752
Alignment:
Q  15 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||||||| |||||   |||||||||||| |||| ||||| ||||||||||||| | |||| |||||| |||||||||| |||||||||||    
T  3844 acagaccacaaaaatttaccattcatattctgcattctcaaactcttttttcatcctatttctctcaattgtcatggctatacaatcaccttc 3752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 3715 - 3635
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||| ||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  3715 agtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaat 3635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 14648 - 14568
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||| ||||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  14648 agtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaat 14568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 4964 - 4884
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  4964 agtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaat 4884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 13925 - 13845
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  13925 agtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaat 13845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 14038 - 13962
Alignment:
Q  31 actcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||||||||||||  ||| ||||| ||||||||||||||| |||| |||||| ||||||||||||||| ||||||    
T  14038 actcattcatattctgaattctcaaactcttttttcatccaatttctctcaattatcatggctatgcaattaccttc 13962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 5073 - 5001
Alignment:
Q  35 attcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    |||||||||||  ||| ||||| ||||||||||||||| |||| |||||||| |||||||| |||||||||||    
T  5073 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttc 5001  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 18724365 - 18724285
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    |||||||||||| |||||||||||||||||||| |||  |||||| ||| ||||||| |||||||||| ||||||||||||    
T  18724365 agtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctcttactgacaagggaat 18724285  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 18679847 - 18679767
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    |||||||||||| |||||||||||||||||||| |||  |||||| ||| ||||||| |||||||||| |||||| |||||    
T  18679847 agtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctcttactgacaaaggaat 18679767  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 18699787 - 18699717
Alignment:
Q  37 tcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    ||||||||| |||| ||||| |||||||||||| |  |||| |||||||||||||||||||||||||||||    
T  18699787 tcatattctgcattctcaaactcttttttcatctagtttctctcaattctcatggctatgcaatcaccttc 18699717  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 18655757 - 18655677
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    |||||||||||| |||||||||||||||||||| |||  |||||| ||  ||||||| || ||||||| ||||||||||||    
T  18655757 agtgttcctcagcttcaggggcagtgacactcgtaacggttttactgggcatctctacaaagctcttactgacaagggaat 18655677  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 18655864 - 18655794
Alignment:
Q  37 tcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    ||||||||| |||| ||||| ||||||||||||||  |||| |||||| ||||||||| ||||||||||||    
T  18655864 tcatattctgcattctcaaactcttttttcatccagtttctctcaattttcatggctaggcaatcaccttc 18655794  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 18679954 - 18679884
Alignment:
Q  37 tcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    ||||||||| |||| ||||| ||||||||||||||  |||| || ||| ||||||||||||||||||||||    
T  18679954 tcatattctgcattctcaaactcttttttcatccagtttctctctattttcatggctatgcaatcaccttc 18679884  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 18731891 - 18731821
Alignment:
Q  37 tcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 107  Q
    ||||||||| |||| ||||| ||||||||||||||  |||| || ||| ||||||||||||||||||||||    
T  18731891 tcatattctgcattctcaaactcttttttcatccagtttctctcgattttcatggctatgcaatcaccttc 18731821  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 18699680 - 18699600
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    |||||||||||| |||||||||| |||||||||  ||  |||||| ||  ||||||| || ||||||| ||||||||||||    
T  18699680 agtgttcctcagcttcaggggcactgacactcgtgacggttttactggccatctctacaaagctcttactgacaagggaat 18699600  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 18731784 - 18731704
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    |||||||||||| ||||||||||||||||||||  ||  |||||| ||  ||||||| |  ||||||| ||||||||||||    
T  18731784 agtgttcctcagcttcaggggcagtgacactcgtgacggttttactggccatctctacagagctcttactgacaagggaat 18731704  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 18724430 - 18724402
Alignment:
Q  79 tcaattctcatggctatgcaatcaccttc 107  Q
    |||||||||||||||||||||||||||||    
T  18724430 tcaattctcatggctatgcaatcaccttc 18724402  T

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Target: scaffold1254 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 210 - 130
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||| ||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  210 agtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaat 130  T

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Target: scaffold1254; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 334 - 249
Alignment:
Q  14 cacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcacct 105  Q
    ||||||||||| ||| ||||||||||||||||||       ||| |||||||||||| || |||| |||||||||||||||||||||||||||    
T  334 cacagaccacaaaaacttactcattcatattctc-------aaactcttttttcatctaatttctctcaattctcatggctatgcaatcacct 249  T

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Target: scaffold0419 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 7419 - 7499
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 191  Q
    ||||||||| ||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    
T  7419 agtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaat 7499  T

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Target: scaffold0419; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 7295 - 7380
Alignment:
Q  14 cacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcacct 105  Q
    ||||||||||| ||| ||||||||||||||||||       ||| |||||||||||| || |||| |||||||||||||||||||||||||||    
T  7295 cacagaccacaaaaacttactcattcatattctc-------aaactcttttttcatctaatttctctcaattctcatggctatgcaatcacct 7380  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 28128040 - 28127995
Alignment:
Q  58 tcttttttcatccaaattctttcaattctcatggctatgcaatcac 103  Q
    |||||| |||||||| || | |||||||||||||||||||||||||    
T  28128040 tcttttctcatccaatttttgtcaattctcatggctatgcaatcac 28127995  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 28164642 - 28164561
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaatt 192  Q
    ||||||||||||||| |||||||||||||||||  ||  ||| || ||  ||||||||||||| |||   ||||||||||||    
T  28164642 agtgttcctcagttttaggggcagtgacactcgtgacggtttcactggccatctctataaggcccttgacgacaagggaatt 28164561  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 28127960 - 28127928
Alignment:
Q  111 agtgttcctcagtttcaggggcagtgacactcg 143  Q
    |||||||||||| ||||||||||||||||||||    
T  28127960 agtgttcctcagcttcaggggcagtgacactcg 28127928  T

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