View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12340_high_1 (Length: 782)

Name: NF12340_high_1
Description: NF12340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12340_high_1
NF12340_high_1
[»] chr3 (1 HSPs)
chr3 (9-767)||(51498668-51499426)


Alignment Details
Target: chr3 (Bit Score: 726; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 9 - 767
Target Start/End: Original strand, 51498668 - 51499426
Alignment:
Q  9 gaacctgtgaaggagcttctaaatgctgtcaaggtgagtaaagtgtctcaattctttttgatttaattcaaaaatatatttgttacccttcgttcatata 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51498668 gaacctgtgaaggagcttctaaatgctgtcaaggtgagtaaagtgtctcaattctttttgatttaattcaaaaatatatttgttacccttagttcatata 51498767  T
Q  109 acaaaacaccatatttcacaattcattccatcaggcaatcaagccaaccgttttgattggatcctctggagtaggaaagacatttaccaaggaagttgtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51498768 acaaaacaccatatttcacaattcattccatcaggcaatcaagccaaccgttttgattggatcctctggagtaggaaagacatttaccaaggaagttgtt 51498867  T
Q  209 gaagccatggcatccttgaatgaggtacattcatgtcttctcaaataatttttactacactataagaagattatatctctaatgtttgtgacatttcttg 308  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51498868 gaagccatggcatccttgaatgaggtacattcatgttttctcaaataatttttactacactataagaagattatatctctaatgtttgtgacatttcttg 51498967  T
Q  309 gcatgtaatctagaaaccactcattcttgcactttccaacccaacatcacaatctgagtgcacagctgaagaagcttatacatggagcaaggtnnnnnnn 408  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  51498968 ccatgtaatctagaaaccactcattcttgcactttccaacccaacatcacaatctgagtgcacagctgaagaagcttatacatggagcaaggtaaaaaaa 51499067  T
Q  409 gttatacgttatttcttatttgcttagcttaagaattgtcattttgtgagttattgttaaagcatataaattataaacaattaaaactcttaactgacag 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51499068 gttatacgttatttcttatttgcttagcttaagaattgtcattttgtgagttattgttaaagcatataaattataaacaattaaaactcttaactgacag 51499167  T
Q  509 tattgctatttcgtctcttttatttgcagggtaaagcaatttttgctagtggaagcccatttgatcctgttgaatatgaaggaaaagtttttgttcctgg 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51499168 tattgctatttcgtctcttttatttgcagggtaaagcaatttttgctagtggaagcccatttgatcctgttgaatatgaaggaaaagtttttgttcctgg 51499267  T
Q  609 acaggttttaattcaatacttaacaaagcattttctttttcaacagacatacattaccaaaattagtgactgactttaatattttgttttgctgcaatgc 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51499268 acaggttttaattcaatacttaacaaagcattttctttttcaacagacatacattaccaaaattagtgactgactttaatattttgttttgctgcaatgc 51499367  T
Q  709 aatttagtccaacaatgcttacatttttcccggatttggtttgggtttgatcatctctg 767  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51499368 aatttagtccaacaatgcttacatttttcccggatttggtttgggtttgatcatctctg 51499426  T

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