View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12340_high_3 (Length: 358)
Name: NF12340_high_3
Description: NF12340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12340_high_3 |
 | |
|
| [»] chr7 (14 HSPs) |
| |
|
| [»] chr1 (5 HSPs) |
| |
|
| [»] scaffold0289 (2 HSPs) |
| |
|
| [»] scaffold0400 (1 HSPs) |
| |
|
| [»] scaffold0365 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 26 - 358
Target Start/End: Original strand, 31058722 - 31059054
Alignment:
| Q |
26 |
aggtttggttgttgctgtgaagaagctacatctagtaacagatgaagaaatgtcatgtttcagttcaaagtcttttatgagtgagattgaaaccttgaca |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058722 |
aggtttggttgttgctgtgaagaagctacatctagtaacagatgaagaaatgtcatgtttcagttcaaagtcttttatgagtgagattgaaaccttgaca |
31058821 |
T |
|
| Q |
126 |
ggaattaaacataggaacatcataaaacttcatggattttgctcacattctaaattctcttttttggtttacaagttcttggaaggtggaagcttagatc |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058822 |
ggaattaaacataggaacatcataaaacttcatggattttgctcacattctaaattctcgtttttggtttacaagttcttggaaggtggaagcttagatc |
31058921 |
T |
|
| Q |
226 |
aaatactaaacaatgacacacaagctgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatga |
325 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058922 |
aaatactaaacaatgacacacaagccgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatga |
31059021 |
T |
|
| Q |
326 |
ttgctcgcctcctataattcatcgcgatatatc |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31059022 |
ttgctcgcctcctataattcatcgcgatatatc |
31059054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 358
Target Start/End: Original strand, 31103165 - 31103498
Alignment:
| Q |
25 |
caggtttggttgttgctgtgaagaagctacatctagtaacagatgaagaaatgtcatgtttcagttcaaagtcttttatgagtgagattgaaaccttgac |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
31103165 |
caggattggttgttgctgtgaagaagcttcatttagtaagagatgaagaaatgtcatttttcagttcgaagtcttttacgagtgagattgaaaccttgac |
31103264 |
T |
|
| Q |
125 |
aggaattaaacataggaacatcataaaacttcatggattttgctcacattctaaattctcttttttggtttacaagttcttggaaggtggaagcttagat |
224 |
Q |
| |
|
|||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
31103265 |
aggaatcaaacacaggaatatcataaagcttcatggattttgctcacattctaagttctcatttttagtttacaagttcatggaaggtggaagcttagat |
31103364 |
T |
|
| Q |
225 |
caaatactaaacaatgacacacaagctgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatg |
324 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31103365 |
caaatactaaacaatgaaaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaaaggtgtcgccaatgctttgtcctacttgcatcatg |
31103464 |
T |
|
| Q |
325 |
attgctcgcctcctataattcatcgcgatatatc |
358 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||| |
|
|
| T |
31103465 |
attgctcacctcctattattcatcgtgatatatc |
31103498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 24 - 358
Target Start/End: Original strand, 31140523 - 31140857
Alignment:
| Q |
24 |
tcaggtttggttgttgctgtgaagaagctacatctagtaacagatgaagaaatgtcatgtttcagttcaaagtcttttatgagtgagattgaaaccttga |
123 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31140523 |
tcaggtatggttgttgctgtgaagaagctacatataataacagatgaagaaatctcacatttcagttcgaagtcttttatgagtgagattgaaaccttgt |
31140622 |
T |
|
| Q |
124 |
caggaattaaacataggaacatcataaaacttcatggattttgctcacattctaaattctcttttttggtttacaagttcttggaaggtggaagcttaga |
223 |
Q |
| |
|
||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31140623 |
caggaatcagacacaggaacatcataaagcttcatggattttgctcacattctaaattctcatttttggtttacaagttcttggaaggaggaagcttagg |
31140722 |
T |
|
| Q |
224 |
tcaaatactaaacaatgacacacaagctgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcat |
323 |
Q |
| |
|
|||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31140723 |
tcaaatgctaaacagtgatacacaagccactgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcat |
31140822 |
T |
|
| Q |
324 |
gattgctcgcctcctataattcatcgcgatatatc |
358 |
Q |
| |
|
||||| || |||||||| |||||||| |||||||| |
|
|
| T |
31140823 |
gattgttctcctcctattattcatcgtgatatatc |
31140857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 90 - 358
Target Start/End: Original strand, 31184310 - 31184578
Alignment:
| Q |
90 |
tcaaagtcttttatgagtgagattgaaaccttgacaggaattaaacataggaacatcataaaacttcatggattttgctcacattctaaattctcttttt |
189 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| |||||| ||||| ||||||||||| || ||||| |||| |||| ||||||||| ||||| |||| |
|
|
| T |
31184310 |
tcaaagtcttttacgagtgagattgaaacattgagaggaatcaaacacaggaacatcatcaaccttcaaggatattgccaacattctaagttctcatttt |
31184409 |
T |
|
| Q |
190 |
tggtttacaagttcttggaaggtggaagcttagatcaaatactaaacaatgacacacaagctgttgcatttgattgggaaaagagggtgaatgttgttaa |
289 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31184410 |
tggtttacaagttcatggaaggtggaagcttagatcaaataataaacaatgaaaaacaagccattgcatttgattgggaaaagagggtgaatgttgttaa |
31184509 |
T |
|
| Q |
290 |
aggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataattcatcgcgatatatc |
358 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||| |
|
|
| T |
31184510 |
aggtgtcgccaatgctttgtcctacttgcatcacgattgctcacctcctattgttcatcgtgatatatc |
31184578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 24 - 174
Target Start/End: Original strand, 31153538 - 31153688
Alignment:
| Q |
24 |
tcaggtttggttgttgctgtgaagaagctacatctagtaacagatgaagaaatgtcatgtttcagttcaaagtcttttatgagtgagattgaaaccttga |
123 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31153538 |
tcaggtatggttgttgctgtgaagaagctacatataataacagatgaagaaatctcacatttcagttcgaagtcttttatgagtgagattgaaaccttgt |
31153637 |
T |
|
| Q |
124 |
caggaattaaacataggaacatcataaaacttcatggattttgctcacatt |
174 |
Q |
| |
|
||||||| | ||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31153638 |
caggaatcagacacaggaacatcataaagcttcatggattttgctcacatt |
31153688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 214 - 358
Target Start/End: Original strand, 31159545 - 31159689
Alignment:
| Q |
214 |
gaagcttagatcaaatactaaacaatgacacacaagctgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtccta |
313 |
Q |
| |
|
||||||||| |||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31159545 |
gaagcttaggtcaaatgctaaacagtgatacacaagccactgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtccta |
31159644 |
T |
|
| Q |
314 |
cttgcatcatgattgctcgcctcctataattcatcgcgatatatc |
358 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||| |||||||| |
|
|
| T |
31159645 |
cttgcatcatgattgttctcctcctattgttcatcgtgatatatc |
31159689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 141 - 325
Target Start/End: Original strand, 31216071 - 31216255
Alignment:
| Q |
141 |
aacatcataaaacttcatggattttgctcacattctaaattctcttttttggtttacaagttcttggaaggtggaagcttaga-tcaaatactaaacaat |
239 |
Q |
| |
|
||||||||||| || |||||| |||| |||||| | |||||| ||||||||||| ||||||||||||||||||| ||| || |||||| |||||||| |
|
|
| T |
31216071 |
aacatcataaagctctatggatattgccgacattcaagattctcatttttggtttataagttcttggaaggtggaa-ctttgactcaaatgttaaacaat |
31216169 |
T |
|
| Q |
240 |
gacacacaagctgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatga |
325 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
31216170 |
gacacacaagccattgcatttgattgggaaaagagggtgaatattgttagaggtgtggctgatgctttgtcctacatgcatcatga |
31216255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 231 - 358
Target Start/End: Original strand, 31241665 - 31241792
Alignment:
| Q |
231 |
ctaaacaatgacacacaagctgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgct |
330 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31241665 |
ctaaacagtgatacacaagccactgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgtt |
31241764 |
T |
|
| Q |
331 |
cgcctcctataattcatcgcgatatatc |
358 |
Q |
| |
|
| |||||||| ||||||| |||||||| |
|
|
| T |
31241765 |
ctcctcctattgttcatcgtgatatatc |
31241792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 253 - 358
Target Start/End: Original strand, 14606666 - 14606771
Alignment:
| Q |
253 |
ttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataattcatcgcga |
352 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||||| ||| ||||||||||| | |||| |||||||||||||||||||||| || ||||||| || |
|
|
| T |
14606666 |
ttgcatttgattggaataagagggtgaatgtcattaaagatgtagccaatgctttatgctacatgcatcatgattgctcgcctccaattgttcatcgaga |
14606765 |
T |
|
| Q |
353 |
tatatc |
358 |
Q |
| |
|
|||||| |
|
|
| T |
14606766 |
tatatc |
14606771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 253 - 358
Target Start/End: Original strand, 16025843 - 16025948
Alignment:
| Q |
253 |
ttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataattcatcgcga |
352 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||||| ||| ||||||||||| | |||| |||||||||||||||||||||| || ||||||| || |
|
|
| T |
16025843 |
ttgcatttgattggaataagagggtgaatgtcattaaagatgtagccaatgctttatgctacatgcatcatgattgctcgcctccaattgttcatcgaga |
16025942 |
T |
|
| Q |
353 |
tatatc |
358 |
Q |
| |
|
|||||| |
|
|
| T |
16025943 |
tatatc |
16025948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 358
Target Start/End: Original strand, 16173319 - 16173424
Alignment:
| Q |
253 |
ttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataattcatcgcga |
352 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||| |||||| ||| || |||||||| | ||| |||| ||||||||||||||||| || ||||||| || |
|
|
| T |
16173319 |
ttgcatttaattggaaaaagcgggtgaatgtcattaaagatgtagctaatgctttatgctatatgcaccatgattgctcgcctccaattgttcatcgaga |
16173418 |
T |
|
| Q |
353 |
tatatc |
358 |
Q |
| |
|
|||||| |
|
|
| T |
16173419 |
tatatc |
16173424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 16103651 - 16103735
Alignment:
| Q |
253 |
ttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcc |
337 |
Q |
| |
|
|||| ||||||||| | ||||| |||||||| |||||| ||| || |||||||| | |||| |||||||||||||||||||||| |
|
|
| T |
16103651 |
ttgcgtttgattggaacaagagagtgaatgtccttaaagatgtagctaatgctttatgctacatgcatcatgattgctcgcctcc |
16103735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 358
Target Start/End: Complemental strand, 15676424 - 15676322
Alignment:
| Q |
256 |
catttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataattcatcgcgatat |
355 |
Q |
| |
|
||||||||||| | ||| ||||||||||| |||||| ||| || |||||||| | ||| |||| ||||||||||| ||||| || ||||||| ||||| |
|
|
| T |
15676424 |
catttgattggaataagcgggtgaatgttattaaagatgtagctaatgctttatactatatgcaccatgattgctcacctccaattgttcatcgagatat |
15676325 |
T |
|
| Q |
356 |
atc |
358 |
Q |
| |
|
||| |
|
|
| T |
15676324 |
atc |
15676322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 358
Target Start/End: Complemental strand, 15664592 - 15664487
Alignment:
| Q |
253 |
ttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataattcatcgcga |
352 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| |||||| | | || |||||||| | ||| |||| ||||||||| | ||||| || ||||||| || |
|
|
| T |
15664592 |
ttgcatttggttggaaaaagagggtgaatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttcatcgaga |
15664493 |
T |
|
| Q |
353 |
tatatc |
358 |
Q |
| |
|
|||||| |
|
|
| T |
15664492 |
tatatc |
15664487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 15011754 - 15011867
Alignment:
| Q |
245 |
acaagctgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataatt |
344 |
Q |
| |
|
|||||||| || |||||||||| | |||||||||||| || |||||| | | || ||||| || | ||| |||||||||| |||||||||||||| || |
|
|
| T |
15011754 |
acaagctggtgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttattctatctgcatcatgactgctcgcctcctattgtt |
15011853 |
T |
|
| Q |
345 |
catcgcgatatatc |
358 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
15011854 |
catcgagatatatc |
15011867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 15017869 - 15017982
Alignment:
| Q |
245 |
acaagctgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataatt |
344 |
Q |
| |
|
|||||||| || |||||||||| | |||||||||||| || |||||| | | || ||||| || | ||| ||||||||||||| || ||||||||| || |
|
|
| T |
15017869 |
acaagctgctgaatttgattggaataagagggtgaatattattaaagatatagctaatgccttatgctatctgcatcatgattgttcccctcctatagtt |
15017968 |
T |
|
| Q |
345 |
catcgcgatatatc |
358 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
15017969 |
catcgagatatatc |
15017982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 358
Target Start/End: Original strand, 15002873 - 15002974
Alignment:
| Q |
257 |
atttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataattcatcgcgatata |
356 |
Q |
| |
|
|||||||||| | |||||||||||| | |||||| ||| || |||||||| | ||| ||||||||||||| || |||||||| ||||||| |||||| |
|
|
| T |
15002873 |
atttgattggaataagagggtgaatatcattaaagatgtagctaatgctttatgctatctgcatcatgattgttcccctcctattgttcatcgagatata |
15002972 |
T |
|
| Q |
357 |
tc |
358 |
Q |
| |
|
|| |
|
|
| T |
15002973 |
tc |
15002974 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 358
Target Start/End: Complemental strand, 14532103 - 14531990
Alignment:
| Q |
245 |
acaagctgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataatt |
344 |
Q |
| |
|
|||||||| || |||||||||| | | |||||||||||| |||||| | | || |||||||| | ||| | |||||||| ||||| |||||||| || |
|
|
| T |
14532103 |
acaagctgctgaatttgattggaataggagggtgaatgtcattaaagatatagctaatgctttatgctatctacatcatgactgctcacctcctattgtt |
14532004 |
T |
|
| Q |
345 |
catcgcgatatatc |
358 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
14532003 |
catcgagatatatc |
14531990 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 14483546 - 14483618
Alignment:
| Q |
286 |
ttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataattcatcgcgatatatc |
358 |
Q |
| |
|
|||||| ||| || |||||||| | |||| ||||||||||| |||| ||| | ||| |||||||||||||||| |
|
|
| T |
14483546 |
ttaaagatgtagctaatgctttatactacatgcatcatgatcgctcaccttcaatagttcatcgcgatatatc |
14483618 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 33885965 - 33886016
Alignment:
| Q |
305 |
tttgtcctacttgcatcatgattgctcgcctcctataattcatcgcgatata |
356 |
Q |
| |
|
||||| |||| |||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33885965 |
tttgtgctacatgcaccatgattgctcgcctccaataattcatcgcgatata |
33886016 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 33895279 - 33895239
Alignment:
| Q |
316 |
tgcatcatgattgctcgcctcctataattcatcgcgatata |
356 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
33895279 |
tgcaccatgattgctcgcctccgataattcatcgctatata |
33895239 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 358
Target Start/End: Complemental strand, 4918 - 4813
Alignment:
| Q |
253 |
ttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataattcatcgcga |
352 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| |||||| | | || |||||||| | ||| |||| ||||||||| | ||||| || ||||||| || |
|
|
| T |
4918 |
ttgcatttggttggaaaaagagggtgaatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttcatcgaga |
4819 |
T |
|
| Q |
353 |
tatatc |
358 |
Q |
| |
|
|||||| |
|
|
| T |
4818 |
tatatc |
4813 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 358
Target Start/End: Complemental strand, 13751 - 13646
Alignment:
| Q |
253 |
ttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataattcatcgcga |
352 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| |||||| | | || |||||||| | ||| |||| ||||||||| | ||||| || ||||||| || |
|
|
| T |
13751 |
ttgcatttggttggaaaaagagggtgaatgttattaaagatatagcgaatgctttatgctatatgcaccatgattgcacccctccaattgttcatcgaga |
13652 |
T |
|
| Q |
353 |
tatatc |
358 |
Q |
| |
|
|||||| |
|
|
| T |
13651 |
tatatc |
13646 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 13542 - 13655
Alignment:
| Q |
245 |
acaagctgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataatt |
344 |
Q |
| |
|
|||||||| || |||||||||| | |||||||||||| | |||||| | | || ||||| || | ||| ||||||||||||| || |||||||| || |
|
|
| T |
13542 |
acaagctgctgaatttgattggaataagagggtgaatatcattaaagatatagctaatgccttattctatctgcatcatgattgttcccctcctattgtt |
13641 |
T |
|
| Q |
345 |
catcgcgatatatc |
358 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
13642 |
catcgagatatatc |
13655 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 14185 - 14298
Alignment:
| Q |
245 |
acaagctgttgcatttgattgggaaaagagggtgaatgttgttaaaggtgtggccaatgctttgtcctacttgcatcatgattgctcgcctcctataatt |
344 |
Q |
| |
|
|||||||| || |||||||||| | |||||||||||| | |||||| | | || ||||| || | ||| ||||||||||||| || |||||||| || |
|
|
| T |
14185 |
acaagctgctgaatttgattggaataagagggtgaatatcattaaagatatagctaatgccttattctatctgcatcatgattgttcccctcctattgtt |
14284 |
T |
|
| Q |
345 |
catcgcgatatatc |
358 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
14285 |
catcgagatatatc |
14298 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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