View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12340_low_1 (Length: 782)

Name: NF12340_low_1
Description: NF12340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12340_low_1
NF12340_low_1
[»] chr3 (1 HSPs)
chr3 (9-767)||(51498668-51499426)


Alignment Details
Target: chr3 (Bit Score: 726; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 9 - 767
Target Start/End: Original strand, 51498668 - 51499426
Alignment:
Q  9 gaacctgtgaaggagcttctaaatgctgtcaaggtgagtaaagtgtctcaattctttttgatttaattcaaaaatatatttgttacccttcgttcatata 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51498668 gaacctgtgaaggagcttctaaatgctgtcaaggtgagtaaagtgtctcaattctttttgatttaattcaaaaatatatttgttacccttagttcatata 51498767  T
Q  109 acaaaacaccatatttcacaattcattccatcaggcaatcaagccaaccgttttgattggatcctctggagtaggaaagacatttaccaaggaagttgtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51498768 acaaaacaccatatttcacaattcattccatcaggcaatcaagccaaccgttttgattggatcctctggagtaggaaagacatttaccaaggaagttgtt 51498867  T
Q  209 gaagccatggcatccttgaatgaggtacattcatgtcttctcaaataatttttactacactataagaagattatatctctaatgtttgtgacatttcttg 308  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51498868 gaagccatggcatccttgaatgaggtacattcatgttttctcaaataatttttactacactataagaagattatatctctaatgtttgtgacatttcttg 51498967  T
Q  309 gcatgtaatctagaaaccactcattcttgcactttccaacccaacatcacaatctgagtgcacagctgaagaagcttatacatggagcaaggtnnnnnnn 408  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  51498968 ccatgtaatctagaaaccactcattcttgcactttccaacccaacatcacaatctgagtgcacagctgaagaagcttatacatggagcaaggtaaaaaaa 51499067  T
Q  409 gttatacgttatttcttatttgcttagcttaagaattgtcattttgtgagttattgttaaagcatataaattataaacaattaaaactcttaactgacag 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51499068 gttatacgttatttcttatttgcttagcttaagaattgtcattttgtgagttattgttaaagcatataaattataaacaattaaaactcttaactgacag 51499167  T
Q  509 tattgctatttcgtctcttttatttgcagggtaaagcaatttttgctagtggaagcccatttgatcctgttgaatatgaaggaaaagtttttgttcctgg 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51499168 tattgctatttcgtctcttttatttgcagggtaaagcaatttttgctagtggaagcccatttgatcctgttgaatatgaaggaaaagtttttgttcctgg 51499267  T
Q  609 acaggttttaattcaatacttaacaaagcattttctttttcaacagacatacattaccaaaattagtgactgactttaatattttgttttgctgcaatgc 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51499268 acaggttttaattcaatacttaacaaagcattttctttttcaacagacatacattaccaaaattagtgactgactttaatattttgttttgctgcaatgc 51499367  T
Q  709 aatttagtccaacaatgcttacatttttcccggatttggtttgggtttgatcatctctg 767  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51499368 aatttagtccaacaatgcttacatttttcccggatttggtttgggtttgatcatctctg 51499426  T

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