View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12340_low_2 (Length: 421)
Name: NF12340_low_2
Description: NF12340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12340_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 2984115 - 2983719
Alignment:
| Q |
17 |
aaaaagaaagttaacaatataacacagaaattcaattgacaatgtcgatattgc-------gatactttcggtgggttcgaacc-atgatcttacagttg |
108 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |||||| ||||| ||||||||||||||| |
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| T |
2984115 |
aaaaagaaagttaacaatataacaaagaaattcaattgacaatgtcgatattgctaaactggatacttttgttgggtttgaacccatgatcttacagttg |
2984016 |
T |
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| Q |
109 |
tatgtatgagtttcatgcaatgtttatcacttcggctatatacagaaacaaaacaaaaatagcgaagaagatgaagaatctctcacgtatcgtttccgat |
208 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2984015 |
tatgtatgagtttcatgcgatgtttatcacttcggctatatacagaaacaaaacaaaaatagcgaagaagatgaagaatctc--acgtatcgtttccgat |
2983918 |
T |
|
| Q |
209 |
tccgagattgagcaaagcgtagagagaagcgatctgagaatcaacgtcttttgaatcgagcattgcgactaatggtggaatagctccgagcatcgaaagt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2983917 |
tccgagattgagcaaagcgtagagagaagcgatctgagaatcaacgtcttttgaatcgagcattgcgactaatggtggaatagctccgagcatcgaaagt |
2983818 |
T |
|
| Q |
309 |
gttcctctgacttccaaattctccttagcgagcattctcacggtggtcgcagcttcacgccgcttcaccgaatcatcttcctcatgcaaatccttcaca |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2983817 |
gttcctctgacttccaaattctccttagcgagcattctcacggtggtcgcagcttcacgccgcttcaccgaatcatcttcctcatgcaaatccttcaca |
2983719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 390
Target Start/End: Complemental strand, 26495437 - 26495393
Alignment:
| Q |
347 |
cacggtggtcgcagcttcacgcc-gcttcaccgaatcatcttcct |
390 |
Q |
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| T |
26495437 |
cacggtggtcgcagcttctcgcccgcttcactgaatcatcttcct |
26495393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 324 - 404
Target Start/End: Original strand, 52528633 - 52528713
Alignment:
| Q |
324 |
aaattctccttagcgagcattctcacggtggtcgcagcttcacgccgcttcaccgaatcatcttcctcatgcaaatccttc |
404 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52528633 |
aaattctccttagcgagcattctcacggtggtcgccgcttctcgccgcttcaccgaatcatcttcctcatgcaaatccttc |
52528713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 324 - 407
Target Start/End: Complemental strand, 37978996 - 37978913
Alignment:
| Q |
324 |
aaattctccttagcgagcattctcacggtggtcgcagcttcacgccgcttcaccgaatcatcttcctcatgcaaatccttcaca |
407 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| |
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| T |
37978996 |
aaattctccttagcgagcattctcatggtggtcgcagcttctcgccgcttcaacgaaacatcttcctcatgcaaatccttcaca |
37978913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 324 - 407
Target Start/End: Original strand, 13863337 - 13863430
Alignment:
| Q |
324 |
aaattctccttagcgagcattctcacggtggtcgcag----------cttcacgccgcttcaccgaatcatcttcctcatgcaaatccttcaca |
407 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13863337 |
aaattctccttagcaagcattctcacggtggtcgcagtttctcgcagcttctcgccgcttcaccgaatcatcttcctcatgcaaatccttcaca |
13863430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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