View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12341_low_2 (Length: 516)
Name: NF12341_low_2
Description: NF12341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12341_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 43278724 - 43278435
Alignment:
| Q |
18 |
atctctatgtcactccttttctttattaatatcttatatgttacaaaaatgttgtctttccgacattttaccgacaatgtattttaattttatttccact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43278724 |
atctctatgtcactccttttctttattaatatcttatatgttacaaaaatgttgtctttccgacattttaccgacaatgtattttaattttatttccact |
43278625 |
T |
|
| Q |
118 |
atgttgatatgttgaagaaatgaatattttattagaaatctaacttttgtgaatgttttacgtttgttttgaaataaatctttaatagcgtaaaaaatac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43278624 |
atgttgatatgttgaagaaatgaatattttattagaaatctaacttttgtgaatgttttacgtttgttttgaaataaatctttaatagcgtaaaaaatac |
43278525 |
T |
|
| Q |
218 |
aatactgttaattttcacatatgagttgtattgttaacaaacnnnnnnnnntatcacatattatgtaagattttattttgaccaaaatag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43278524 |
aatactgttaattttcacatatgagttgtattgttaacaaacaaaaaaaaatatcacatattatgtaagattttattttgaccaaaatag |
43278435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 413 - 512
Target Start/End: Complemental strand, 43278327 - 43278228
Alignment:
| Q |
413 |
tatggatctcaatggatttataacatatatttttaagatttcaaagtactttgtgggtttgtaagatttgaaaagataaaaactctcttctctgcttctc |
512 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
43278327 |
tatgaatctcaatggatttataacatatatttttaagatttcaaagtactttgtgggtttataaaatttgaaaagataaaaactctcttctcttcttctc |
43278228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 485
Target Start/End: Complemental strand, 55901672 - 55901610
Alignment:
| Q |
423 |
aatggatttataacatatatttttaagatttcaaagtactttgtgggtttgtaagatttgaaa |
485 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||| || ||| ||| ||| |||||||||||| |
|
|
| T |
55901672 |
aatggatttataacacatacttttaagattttaaactattttatggatttataagatttgaaa |
55901610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 36430243 - 36430204
Alignment:
| Q |
425 |
tggatttataacatatatttttaagatttcaaagtacttt |
464 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
36430243 |
tggatttataacatagacttttaagatttcaaagtacttt |
36430204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 38896907 - 38896937
Alignment:
| Q |
30 |
ctccttttctttattaatatcttatatgtta |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38896907 |
ctccttttctttattaatatcttatatgtta |
38896937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 28592309 - 28592265
Alignment:
| Q |
441 |
atttttaagatttcaaagtactttgtgggtttgtaagatttgaaa |
485 |
Q |
| |
|
||||||||||||||||| |||||| | ||||| |||||||||||| |
|
|
| T |
28592309 |
atttttaagatttcaaaatactttataggtttttaagatttgaaa |
28592265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University