View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12342_high_2 (Length: 417)

Name: NF12342_high_2
Description: NF12342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12342_high_2
NF12342_high_2
[»] chr8 (2 HSPs)
chr8 (227-400)||(12933811-12933984)
chr8 (340-377)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (227-400)||(28608621-28608794)
chr4 (250-400)||(14177081-14177231)
chr4 (339-392)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (370-407)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (370-407)||(796698-796735)
chr6 (370-407)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (370-407)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 400
Target Start/End: Complemental strand, 12933984 - 12933811
Alignment:
Q  227 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 325  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  12933984 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 12933885  T
Q  326 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 400  Q
    || ||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933884 ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 377
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  340 ggttgctccatataaatctcctcttccaaatctccatg 377  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 400
Target Start/End: Original strand, 28608621 - 28608794
Alignment:
Q  227 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 325  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  28608621 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 28608720  T
Q  326 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 400  Q
    ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608721 ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 400
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  250 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 348  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  349 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 400  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  339 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 392  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  370 tctccatgaagaaatgcagttttcacatccaactgctc 407  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 407
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  370 tctccatgaagaaatgcagttttcacatccaactgctc 407  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  370 tctccatgaagaaatgcagttttcacatccaactgctc 407  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  370 tctccatgaagaaatgcagttttcacatccaactgctc 407  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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