View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12342_high_3 (Length: 335)
Name: NF12342_high_3
Description: NF12342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12342_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 3332113 - 3332434
Alignment:
| Q |
1 |
gtcaaaccagaagcagcgggcggagcaggtggtggaagaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaacagccccaggag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3332113 |
gtcaaaccagaagcagcgggcggagcaggtggtggaagaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaacagctccaggag |
3332212 |
T |
|
| Q |
101 |
aagccggttgccttagtgtcacgtttgtaaccgtccctgtcccactcatgatgcaaacgcctctttgacggcgtctagcaaagttgttgacactttcaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3332213 |
aagccggttgccttagtgtcacgtttgtaaccgtccctgtcccactcatgatgcaaacgcctctttgacggcgtctagcgaagttgttgacactttcaac |
3332312 |
T |
|
| Q |
201 |
aacgtcacaaccgtctgcaacttccatcacgtgagttttcaaggcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3332313 |
aacgtcacaaccgtctgcaacttccatcacgtgagttttcaaggcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatcca |
3332412 |
T |
|
| Q |
301 |
gctggtcttcctcttggtcttc |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3332413 |
gctggtcttcctcttggtcttc |
3332434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 13212814 - 13212892
Alignment:
| Q |
244 |
gcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
322 |
Q |
| |
|
||||| |||||||| | |||||||| || |||||||||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
13212814 |
gcgttcgcgctgtccctcgtgatgatgataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttc |
13212892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 32803230 - 32803278
Alignment:
| Q |
274 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
322 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32803230 |
ggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
32803278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 16578665 - 16578617
Alignment:
| Q |
274 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
322 |
Q |
| |
|
|||||||||||||||||||| || || | |||||||||||||||||||| |
|
|
| T |
16578665 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
16578617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 32809703 - 32809738
Alignment:
| Q |
287 |
tgtttttggatccagctggtcttcctcttggtcttc |
322 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32809703 |
tgtttttggatccaggtggtcttcctcttggtcttc |
32809738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 46200964 - 46200911
Alignment:
| Q |
261 |
tgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctct |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || |||| ||| | |||||| |
|
|
| T |
46200964 |
tgtgatgataataggtggttttggtttgttttttgagccaggtggacgtcctct |
46200911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University