View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12342_high_7 (Length: 305)
Name: NF12342_high_7
Description: NF12342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12342_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 23244097 - 23243799
Alignment:
| Q |
1 |
aattacattttttagatgatgtgacgtcaaaacttaaatgatttataaattaagactaaagaagaatatattttgtttttcgacacaaaaatgataatgt |
100 |
Q |
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| T |
23244097 |
aattacattttttagatgatgtgacgtcaaaacttaaatgatttataaattaagactaaagaagaatatattttgtttttcgacacaaaaatgataatgt |
23243998 |
T |
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| Q |
101 |
atattttctttttgctnnnnnnngaggaatatacttaaaatgacataaatgataaatatgcatgcatgcatatataatggatttaccataatcaaggcct |
200 |
Q |
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| T |
23243997 |
atattttctttttgctaaaaaaagaagaatatacttaaaatgacataaatgataaatatgtatgcatgcatatataatggatttaccataatcaaggcct |
23243898 |
T |
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| Q |
201 |
taatgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctcttatctccccctttcttctctctc |
299 |
Q |
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| T |
23243897 |
taacgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctcttatctccccctttctactctctc |
23243799 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 9399779 - 9399872
Alignment:
| Q |
183 |
ttaccataatcaaggccttaatgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctct |
276 |
Q |
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| T |
9399779 |
ttaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcggcacaatcaagcaatatatcaagaaagtctct |
9399872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 9382310 - 9382403
Alignment:
| Q |
183 |
ttaccataatcaaggccttaatgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctct |
276 |
Q |
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| T |
9382310 |
ttaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaagcaatatatcaagaaagtctct |
9382403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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