View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12343_high_1 (Length: 665)
Name: NF12343_high_1
Description: NF12343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12343_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 31 - 464
Target Start/End: Complemental strand, 6170082 - 6169654
Alignment:
| Q |
31 |
gaatattggtgatcaagtattgataaatgaattattcatcgatggaaattccttgagagttgatgaatgaagcatgaccagtgcgagtgatcatgtagag |
130 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6170082 |
gaatattggtgatcaagtattgataaatggattattcatcgatggaaattccttgagagttgatgaatgaagcatgaccagtgcgagtgatcatgtagag |
6169983 |
T |
|
| Q |
131 |
attagtagtagaaaccctcatccttttttggaacaaaagttgtcgacgaatggatgaaagtgtacacgttacgttggtcgatttgaaaacaccaacggga |
230 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6169982 |
attagtag---aaaccctcatccttttttggaacaaaagttgtcgacgaatgcatgaaagtgtacacgttacattggtcgatttgaaaacaccaacggga |
6169886 |
T |
|
| Q |
231 |
caaatgaggctattgacattgcagaaaatcctatgtttgtaaataataatagcagcagcaacttcatcccattgttccaataaaccttccaaattttgta |
330 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6169885 |
caaatgaagctattgacattgcagaaaatcctatgtttgtaaataataatagcagcagcaacttcatcccattgttccaataaaccttccaaattttgta |
6169786 |
T |
|
| Q |
331 |
atgttttctatgtttatcctcaaaaaacaaattccnnnnnnnnnnnnaatacaaacttttgttttcttacgcatgcatctccaattttattctatagggc |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6169785 |
atgttttctatgtttatcctcaaaaaacaaattcc--atttttttttaatacaaacttttgtattcttacgcatgcatctccaattttattctatagggc |
6169688 |
T |
|
| Q |
431 |
ttgaactctctatttataaaaacaatcaactacg |
464 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
6169687 |
ttgaactctctatttataaaaacaatcaaatacg |
6169654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 461 - 649
Target Start/End: Complemental strand, 6168649 - 6168461
Alignment:
| Q |
461 |
tacgatcacaaacggtttaggtcggaaaaacaatttatgtgagaaatatttaatccacacatagtcataaccttgaaatgttctaggcattcatttacgt |
560 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6168649 |
tacgattacaaacggtttaggtcggaaaaacaatttatgtgagaaatatttaatccatacatagtcataaccttgaaatgttctaggcattcatttacgt |
6168550 |
T |
|
| Q |
561 |
cttcccaatttggaattctcattcaaaatttcattatcctttcttttttaatgatttaaattttcattaaaatcaaccaaacaccatca |
649 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6168549 |
cttcccaatttagaattctcattcaaaatttcattatcctttcttttttaatgatttaaattttcattaaaatcaaccaaacaccatca |
6168461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 6186988 - 6186927
Alignment:
| Q |
71 |
gatggaaattccttgagagttgatgaatgaagcatgaccagtgcgagtgatcatgtagagat |
132 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
6186988 |
gatggacattcgttgagagttgatgaatcgagcatgaccggtgagagtgatcatgtagagat |
6186927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 4243932 - 4243869
Alignment:
| Q |
71 |
gatggaaattccttgagagttgatgaatgaagcatgaccagtgcgagtgatcatgtagagatta |
134 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
4243932 |
gatggacattcgttgagagttgatgaatcgagcatgaccggtgagagcgatcatgtagagatta |
4243869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University