View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12344_low_1 (Length: 354)
Name: NF12344_low_1
Description: NF12344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12344_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 139 - 339
Target Start/End: Original strand, 40827442 - 40827642
Alignment:
| Q |
139 |
tcatcaatttagtccatactatttttgaaggaatttagtccatactattaaaatttgaatggatcaattatggattttaatatacttttaaagagtaagt |
238 |
Q |
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| T |
40827442 |
tcatcaatttagtccatactatttttgaaggaatttagtccatactattaaaatttgaatggatcaattatggattttaatatacttttaaagagtaagt |
40827541 |
T |
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| Q |
239 |
tgatagattttactatagtttaaggattcattagtataattatatagtttaatgataaattggagagattgataatttagaggttaacttggtaatttag |
338 |
Q |
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| T |
40827542 |
tgatagattttactatagtttaaggattcattagtataattatatagtttaaagataaattggagagattgataatttagaggttaacttggtaatttag |
40827641 |
T |
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| Q |
339 |
t |
339 |
Q |
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| T |
40827642 |
t |
40827642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 40827302 - 40827391
Alignment:
| Q |
1 |
agtttgggaattataggaagaatgacatccattatatagagaagaatacattactttctaaactatcattcacttttcaatttagtcctt |
90 |
Q |
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| T |
40827302 |
agtttgggaattatagggagaatgacatccattatatagagaagaatacattactttctaaactatcattcacttttcaatttagtcctt |
40827391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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