View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12345_low_1 (Length: 551)
Name: NF12345_low_1
Description: NF12345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12345_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 221 - 538
Target Start/End: Original strand, 36269746 - 36270063
Alignment:
| Q |
221 |
caaaaccattcttataagatccaattgtgtatcacattgcttcaatgtcttcttcctcgcaggaacagaaccagaaggtgaatctgtcaacgattcagaa |
320 |
Q |
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| T |
36269746 |
caaaaccattcttataagatccaattgtgtatcacattgcttcaatgtcttcttcctcgcaggaacagaaccagaaggtgaatctgtcaacgattcagaa |
36269845 |
T |
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| Q |
321 |
ctctctgcaagcttcactttcttcttcttagtttttctcagctccattttgaactctttttctaccctaactgtttcttccacattgtcaacaccaacaa |
420 |
Q |
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| T |
36269846 |
ctctctgcaagcttcactttcttcttcttagtttttctcagctccattttgaactccttttctaccctaactgtttcttccacattgtcaacaccaacaa |
36269945 |
T |
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| Q |
421 |
cagtttcttgttcttgttcttcttccttgttcttacgctttctctgaagcttcaaagactctggtaccttttctctatattgacgatgcttcccttgaag |
520 |
Q |
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| T |
36269946 |
cagtttcttgttcttgttcttcttccttgttcttacgctttctctgaagcttcaaagactctggtaccttttctctatattgacgatgcttcccttgaag |
36270045 |
T |
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| Q |
521 |
ataatgaatctcacacag |
538 |
Q |
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| T |
36270046 |
ataatgaatctcacacag |
36270063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 36269544 - 36269630
Alignment:
| Q |
19 |
aatgagtccccacatttttataatcacccggcgtcgaagccggtgatatctccattactccatttggtaattctctcctcaactcac |
105 |
Q |
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| T |
36269544 |
aatgagtccccacatttttataatcacccggcgtcgaagccggtgatatctccattactccatttggtaattctctcctcaactcac |
36269630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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