View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12345_low_2 (Length: 468)

Name: NF12345_low_2
Description: NF12345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12345_low_2
NF12345_low_2
[»] chr2 (24 HSPs)
chr2 (33-450)||(32813371-32813807)
chr2 (261-450)||(32786407-32786596)
chr2 (11-265)||(32310895-32311158)
chr2 (261-450)||(32306546-32306735)
chr2 (261-450)||(32310676-32310865)
chr2 (261-450)||(32792790-32792979)
chr2 (261-441)||(32799458-32799638)
chr2 (261-446)||(28213971-28214156)
chr2 (261-450)||(32563955-32564144)
chr2 (263-446)||(28222128-28222311)
chr2 (11-179)||(28222449-28222616)
chr2 (31-192)||(32792566-32792736)
chr2 (92-265)||(32799246-32799428)
chr2 (282-448)||(28158866-28159032)
chr2 (11-150)||(28213660-28213797)
chr2 (275-441)||(28177536-28177708)
chr2 (47-199)||(32563728-32563885)
chr2 (11-78)||(32790307-32790374)
chr2 (318-394)||(28161723-28161799)
chr2 (318-394)||(28171760-28171836)
chr2 (88-183)||(32785109-32785214)
chr2 (19-68)||(32799198-32799247)
chr2 (209-265)||(32306765-32306821)
chr2 (226-265)||(32563887-32563926)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 33 - 450
Target Start/End: Original strand, 32813371 - 32813807
Alignment:
Q  33 aatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaataccttggaatcaaagttttaa 132  Q
    ||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32813371 aatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaa 32813470  T
Q  133 taaagcataccataacacctt---------atatttactgcagccttgcaacactatagtaaacattttttaacacggtgccacaaaaatctataaattc 223  Q
    |||| |||| || ||||| ||         ||||||| |||||||||||||||||| |||||||| |||||||||| || |||  |||||| ||||||||    
T  32813471 taaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacagtttttaacacagttccatcaaaatcaataaattc 32813570  T
Q  224 tgtaacagttgtcactttacatggccaaaactaccct----------caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttac 313  Q
    ||||||| |||||| |||||||||||||||||  | |          ||||||| |||||| |||||||| ||||||||||| |||||||||||||||||    
T  32813571 tgtaacatttgtcattttacatggccaaaacttgcataggaagagaacaaattttctaaaccagaatgaattatatgaaccaactcacttaagagcttac 32813670  T
Q  314 gagatgggagcaattcagacgaaccggaccttgatttccagtcaaaacatcaaggttagacaatttcgacataacccttgcgaaatccatctgaaaggtt 413  Q
     ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  32813671 aagacgggagcaattcagacgaacctgaccttgatttccagtcaaaacatcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggtt 32813770  T
Q  414 gatccgtcatctgaagcataagcagaaaccaatctgg 450  Q
    |||||||||||||||||||||||| ||||||||||||    
T  32813771 gatccgtcatctgaagcataagcaaaaaccaatctgg 32813807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 261 - 450
Target Start/End: Original strand, 32786407 - 32786596
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacgaaccggaccttgatttccagtcaaaa 360  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  32786407 caaatttgctaaaccagaatgaaatatatgaaccgactcacttaagagcttacaagatgggagcaattcagacgaacctgaccttgatttccagtcaaaa 32786506  T
Q  361 catcaaggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctgg 450  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32786507 catcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctgg 32786596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 32311158 - 32310895
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaa 110  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32311158 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaa 32311059  T
Q  111 taccttggaatcaaagttttaataaagcataccataacac---------cttatatttactgcagccttgcaacactatagtaaacattttttaacacgg 201  Q
    |||||||||||| ||||||||||||| |||| || |||||          ||||||||| |||||||||||||||||| ||||||||||||| ||| | |    
T  32311058 taccttggaatccaagttttaataaaacataacagaacactttgacttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccag 32310959  T
Q  202 tgccacaaaaatctataaattctgtaacagttgtcactttacatggccaaaactaccctcaaat 265  Q
    |||||  |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32310958 tgccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaat 32310895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 261 - 450
Target Start/End: Complemental strand, 32306735 - 32306546
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacgaaccggaccttgatttccagtcaaaa 360  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||    
T  32306735 caaatttgctaaactagaatgaaatatatgaaccaactcacttaagagtttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaa 32306636  T
Q  361 catcaaggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctgg 450  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32306635 catcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctgg 32306546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 261 - 450
Target Start/End: Complemental strand, 32310865 - 32310676
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacgaaccggaccttgatttccagtcaaaa 360  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||    
T  32310865 caaatttgctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaa 32310766  T
Q  361 catcaaggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctgg 450  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32310765 catcgaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctgg 32310676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 261 - 450
Target Start/End: Original strand, 32792790 - 32792979
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacgaaccggaccttgatttccagtcaaaa 360  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||    
T  32792790 caaatttgataaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaa 32792889  T
Q  361 catcaaggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctgg 450  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32792890 catcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaatctgg 32792979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 261 - 441
Target Start/End: Original strand, 32799458 - 32799638
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacgaaccggaccttgatttccagtcaaaa 360  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||    
T  32799458 caaatttgctaaactagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttccagtcaaaa 32799557  T
Q  361 catcaaggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaa 441  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32799558 catcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaa 32799638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 261 - 446
Target Start/End: Original strand, 28213971 - 28214156
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacgaaccggaccttgatttccagtcaaaa 360  Q
    |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||    
T  28213971 caaatttgctaaaccagaatgaaatatatgaaccaactcgcttaagagcttacgacacgggagcaattcagacgaacctgaccttgatttccagtcaaaa 28214070  T
Q  361 catcaaggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaat 446  Q
    ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28214071 catcaaggttagacaatttcatcataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcagaaaccaat 28214156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 261 - 450
Target Start/End: Original strand, 32563955 - 32564144
Alignment:
Q  261 caaatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacgaaccggaccttgatttccagtcaaaa 360  Q
    ||||||| |||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| ||||||||    
T  32563955 caaattttctaaaccagaatgaaatatatgaaccaactcacttaagagcttacaagacgggagcaattcagacgaacctgaccttgatttcaagtcaaaa 32564054  T
Q  361 catcaaggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatctgg 450  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  32564055 catcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggtagatccgtcatctgaagcataagcagaaaccaatctgg 32564144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 263 - 446
Target Start/End: Complemental strand, 28222311 - 28222128
Alignment:
Q  263 aatttgctaaacaagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacgaaccggaccttgatttccagtcaaaaca 362  Q
    |||||||||| | |||||||||||||||||||| ||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||    
T  28222311 aatttgctaagccagaatgaaatatatgaaccaactcgcttaagagcttacgacacgggagcaattcagacgaacctgaccttgatttccagtcaaaaca 28222212  T
Q  363 tcaaggttagacaatttcgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaat 446  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  28222211 tcaaggttagacaatttcaacataacccttgcgaaatccatccgaaaggttgatccgtcatctgaagcataagcaaaaaccaat 28222128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 179
Target Start/End: Complemental strand, 28222616 - 28222449
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaa 110  Q
    ||||||||||| ||||||||| | ||||||||||| |||| ||| || ||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  28222616 cacagaagcagctgtgacttgtattatcatatctaagaatgattccttgatctataattgtaagagttgaatagggagcttatacaaaaatatacttcaa 28222517  T
Q  111 taccttggaatcaaagttttaataaagcataccataacaccttatatttactgcagccttgcaacacta 179  Q
    |||||||||||| |||||||| ||| ||||| || |||| |||  ||||| ||||||||||||||||||    
T  28222516 taccttggaatccaagttttattaaggcataacagaaca-ctttgatttattgcagccttgcaacacta 28222449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 32792566 - 32792736
Alignment:
Q  31 gcaatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaataccttggaatcaaagtttt 130  Q
    ||||| ||||||||| ||||||||| | ||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  32792566 gcaatctcatatctaagaatcatttattgatctctaattgtaagagttcaatacggagcttatacaaaaatatacttcaataccttggaatccaagtttt 32792665  T
Q  131 aataaagcataccataaca---------ccttatatttactgcagccttgcaacactatagtaaacatttt 192  Q
    ||||||||||| || ||||           ||||||||| |||||||||||||||||||||||||||||||    
T  32792666 aataaagcataacagaacaatttgatttgtttatatttattgcagccttgcaacactatagtaaacatttt 32792736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 92 - 265
Target Start/End: Original strand, 32799246 - 32799428
Alignment:
Q  92 atacaaaaatatacttcaataccttggaatcaaagttttaataaagcataccataacacctt---------atatttactgcagccttgcaacactatag 182  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||  | ||||| ||         ||||||| |||||||||||||||||| ||    
T  32799246 atacaaaaatatacttcaataccttggaatctaagttttaataaggcataaaagaacactttgatttgttgatatttattgcagccttgcaacactagag 32799345  T
Q  183 taaacattttttaacacggtgccacaaaaatctataaattctgtaacagttgtcactttacatggccaaaactaccctcaaat 265  Q
    ||||||| |||||| || ||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||| ||||    
T  32799346 taaacatattttaaaacagtgccacaaaaatttataaattctataatagctgtcactttacatggccaaaactaccctaaaat 32799428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 282 - 448
Target Start/End: Complemental strand, 28159032 - 28158866
Alignment:
Q  282 aaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacgaaccggaccttgatttccagtcaaaacatcaaggttagacaatttcg 381  Q
    |||||||| ||||| |||| |||||| ||||  |  | ||| ||||||||||||||| |||||| ||||||||||||||||||||  ||||||||||||     
T  28159032 aaatatatcaaccaactcagttaagaacttataatttcggaacaattcagacgaacctgacctttatttccagtcaaaacatcaatattagacaatttca 28158933  T
Q  382 acataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaaccaatct 448  Q
    |||  |||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||    
T  28158932 acaccacccttgccaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaatcaatct 28158866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 28213660 - 28213797
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatctaggaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaa 110  Q
    |||||||||||||||||||||||||||||||||   |||| ||| |  ||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  28213660 cacagaagcagttgtgacttgcaatatcatatcatagaattattccaagatctctaattgtaagagttgaatagggagctta--caaaaatatacttcaa 28213757  T
Q  111 taccttggaatcaaagttttaataaagcataccataacac 150  Q
    |||||||||||| |||||||| ||| ||||| || |||||    
T  28213758 taccttggaatccaagttttattaaggcataacagaacac 28213797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 275 - 441
Target Start/End: Complemental strand, 28177708 - 28177536
Alignment:
Q  275 aagaatgaaatatatgaaccagctcacttaagagcttacgagatgggagcaattcagacgaaccggaccttgatttccagtcaaaacatcaaggttagac 374  Q
    |||||| |||||||| ||||| |||| |||||| ||||  |  ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  28177708 aagaattaaatatatcaaccaactcagttaagaacttataatttgggaacaattcagacgaacctgaccttgatttccagtcaaaacatcaagattagac 28177609  T
Q  375 aattt------cgacataacccttgcgaaatccatctgaaaggttgatccgtcatctgaagcataagcagaaa 441  Q
    |||||      | |||  |||||||| ||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  28177608 aatttgaactccaacaccacccttgcaaaatccatccgaaaggttgatccgtcatcggaagcattagcagaaa 28177536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 32563728 - 32563885
Alignment:
Q  47 gaatcatttctggatctctaattgttagagttgaatagggagcttatacaaaaatatacttcaataccttggaatcaaagttttaataaagcataccata 146  Q
    ||||||||| | ||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| || |    
T  32563728 gaatcatttattgatatctaattgtaagagctgaatagggagcttataaaaaaatatacttcaataccttggaatccaagttttaataaagcataacaga 32563827  T
Q  147 acac---------cttatatttactgcagccttgcaacactatagtaaacattttttaacac 199  Q
    ||||          ||||||||| |||||||||||||||    |||||||||||||||||||    
T  32563828 acactttgatttgtttatatttattgcagccttgcaaca----agtaaacattttttaacac 32563885  T

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Target: chr2; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 32790307 - 32790374
Alignment:
Q  11 cacagaagcagttgtgacttgcaatatcatatctaggaatcatttctggatctctaattgttagagtt 78  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |  |||||||||||| ||||||    
T  32790307 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagtt 32790374  T

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Target: chr2; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 28161799 - 28161723
Alignment:
Q  318 tgggagcaattcagacgaaccggaccttgatttccagtcaaaacatcaaggttagacaatttcgacataacccttgc 394  Q
    ||||| |||||||||| |||| |||||||||||||||||||||||||||  |||||||||||| ||| || ||||||    
T  28161799 tgggaacaattcagacaaacctgaccttgatttccagtcaaaacatcaatattagacaatttcaacacaatccttgc 28161723  T

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Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 28171836 - 28171760
Alignment:
Q  318 tgggagcaattcagacgaaccggaccttgatttccagtcaaaacatcaaggttagacaatttcgacataacccttgc 394  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||||||  |||||||||||| |||  ||||||||    
T  28171836 tgggaacaattcagatgaacctgaccttgatttccagtcaaaacatcaacattagacaatttcaacaccacccttgc 28171760  T

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Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 32785109 - 32785214
Alignment:
Q  88 gcttatacaaaa-atatacttcaataccttggaatcaaagttttaataaagcataccataacacctt---------atatttactgcagccttgcaacac 177  Q
    |||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||| || ||||  ||         ||||||||||||||||||||||||    
T  32785109 gcttattcaaaagatatacttcaataccttggaatccaagttttaataaggcataacagaacattttcatttgttgatatttactgcagccttgcaacac 32785208  T
Q  178 tatagt 183  Q
    ||||||    
T  32785209 tatagt 32785214  T

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Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 32799198 - 32799247
Alignment:
Q  19 cagttgtgacttgcaatatcatatctaggaatcatttctggatctctaat 68  Q
    ||||||||||||||||||||||||||| |||||||| || ||||||||||    
T  32799198 cagttgtgacttgcaatatcatatctaagaatcattccttgatctctaat 32799247  T

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Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 32306821 - 32306765
Alignment:
Q  209 aaaatctataaattctgtaacagttgtcactttacatggccaaaactaccctcaaat 265  Q
    |||||| ||||||||||||| || ||| |||||||||||||||||||||||| ||||    
T  32306821 aaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctaaaat 32306765  T

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Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 32563887 - 32563926
Alignment:
Q  226 taacagttgtcactttacatggccaaaactaccctcaaat 265  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  32563887 taacagctgtcactttacatggccaaaactaccctcaaat 32563926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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