View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12345_low_3 (Length: 419)
Name: NF12345_low_3
Description: NF12345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12345_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 32419390 - 32419790
Alignment:
| Q |
9 |
aacctgtgcaccagaaggtataaaatcccaggatctaacagcccatcctttctttgcagtacggaaaacctatgtaataatttgattgaatactcaaact |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32419390 |
aaccggtgcaccagaaggtataaaatcccaggatctaacagcccatcctttctttgcagtacggaaaacctatgtaataatttgattgaatactcaaact |
32419489 |
T |
|
| Q |
109 |
caacactccattgtttataactaatattaatgttcatgtaaggaaataaatagtgtacaacctccagacgatagtgaagtcctctttgagaagtcctatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32419490 |
caacactccattgtttataactaatattaatgttcatgtaaggaaataaatagtgtacaacctccagacgatagtgaagtcctctttgagaagtcctatt |
32419589 |
T |
|
| Q |
209 |
cacacactcaggaccacagccacaattgggaccacattcaaacacaacgtctttagcttcaattaatctgtcaatacataagaaaacattaatattgcag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32419590 |
cacacactcaggaccacagccacaattgggaccacattcaaacacaacgtctttagcttcaattaatctgtcaatacataagaaaacattaatattgcag |
32419689 |
T |
|
| Q |
309 |
caaacataatttaaatagcatctcgccgaagtttctaacctgccaccatctttagatacatagggaaattcagagccattgcgctttgcacattcacagg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32419690 |
caaacataatttaaatagcatctcgccgaagtttctaacctgccaccatctttagatacatagggaaattcagagccattgcgctttgcacattcacagg |
32419789 |
T |
|
| Q |
409 |
t |
409 |
Q |
| |
|
| |
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|
| T |
32419790 |
t |
32419790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 167 - 273
Target Start/End: Complemental strand, 21240891 - 21240785
Alignment:
| Q |
167 |
aacctccagacgatagtgaagtcctctttgagaagtcctattcacacactcaggaccacagccacaattgggaccacattcaaacacaacgtctttagct |
266 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21240891 |
aacctctagacgatattgaagtcctctttgagaagtcctattcacgcactcaggaccacagccacaattgggaccacattcaaacacaacgtctttagct |
21240792 |
T |
|
| Q |
267 |
tcaatta |
273 |
Q |
| |
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||||||| |
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|
| T |
21240791 |
tcaatta |
21240785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 21287817 - 21287923
Alignment:
| Q |
167 |
aacctccagacgatagtgaagtcctctttgagaagtcctattcacacactcaggaccacagccacaattgggaccacattcaaacacaacgtctttagct |
266 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21287817 |
aacctctagacgatattgaagtcctctttgagaagtcctattcacgcactcaggaccacagccacaattgggaccacattcaaacacaacgtctttagct |
21287916 |
T |
|
| Q |
267 |
tcaatta |
273 |
Q |
| |
|
||||||| |
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|
| T |
21287917 |
tcaatta |
21287923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 21287756 - 21287821
Alignment:
| Q |
14 |
gtgcaccagaaggtataaaatcccaggatctaacagcccatcctttctttgcagtacggaaaacct |
79 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21287756 |
gtgcaccagaaggtataaaatcccaggatctaacagcccatcctttctttgcagtacggaaaacct |
21287821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 21240952 - 21240887
Alignment:
| Q |
14 |
gtgcaccagaaggtataaaatcccaggatctaacagcccatcctttctttgcagtacggaaaacct |
79 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21240952 |
gtgcacctgaaggtataaaatcccaggatctaacagcccatcctttctttgcagtacggaaaacct |
21240887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 21240779 - 21240721
Alignment:
| Q |
351 |
ccaccatctttagatacatagggaaattcagagccattgcgctttgcacattcacaggt |
409 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |
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| T |
21240779 |
ccaccatctttagatacatatggaaattcagagccattgctcttcgcacattcacaggt |
21240721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 21287929 - 21287987
Alignment:
| Q |
351 |
ccaccatctttagatacatagggaaattcagagccattgcgctttgcacattcacaggt |
409 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |
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| T |
21287929 |
ccaccatctttagatacataaggaaattcagagccattgcacttcgcacattcacaggt |
21287987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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