View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12345_low_4 (Length: 281)
Name: NF12345_low_4
Description: NF12345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12345_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 11646453 - 11646374
Alignment:
| Q |
189 |
tgcaagttattcaacttaacttgttatttaaggaactcaaaaaagagacgatgtttattcaaattcagtgcataccacag |
268 |
Q |
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| T |
11646453 |
tgcaagttattcaacttaacttgttatttaaggaactcaaaaaagagactatgtttattcaaattcagtgcatactacag |
11646374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 11591132 - 11591206
Alignment:
| Q |
20 |
ctcttcctcttccttcttctttctctattttcatcctttcaaacattaactgattattgaaaacaacagaacaat |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11591132 |
ctcttcctcttccttcttctttctctattttcatcctttcaaacattaactgatcattgaaaacaacagaacaat |
11591206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 11646535 - 11646461
Alignment:
| Q |
20 |
ctcttcctcttccttcttctttctctattttcatcctttcaaacattaactgattattgaaaacaacagaacaat |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11646535 |
ctcttcctcttccttcttctttctctattttcatcctttcaaacattaactgatcattgaaaacaacagaacaat |
11646461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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