View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12346_high_1 (Length: 493)
Name: NF12346_high_1
Description: NF12346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12346_high_1 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 231 - 493
Target Start/End: Original strand, 30508487 - 30508749
Alignment:
| Q |
231 |
gaattattctttaccttgtttcatacagctagagctagctttaggtagttctaaaagtacaactaagatgctaatatactctaaggtagattcgatatgc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30508487 |
gaattattctttaccttgtttcatacagctagagctagctttaggtagttctaaaagtacaactaagatgctaatatactctaaggtagattcgatatgc |
30508586 |
T |
|
| Q |
331 |
tgagatgtgaattccaacttgcattttttcatttatgtgtacgagtgagtttcgttgttagataatgattaacgtcgccacgttgggtacaagttcttca |
430 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30508587 |
tgagatgtgaattccaacttgcattttctcatttatgtgtacgagtgagtttcgttgttagataatgattaacgtcgccacgttgggtacaagttcttca |
30508686 |
T |
|
| Q |
431 |
cataagttttgaccaatcaattagagaatgagggtcgaaggtatccaaaatggtttatgatga |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30508687 |
cataagttttgaccaatcaattagagaatgagggtcgaaggtatccaaaatggtttatgatga |
30508749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 30508256 - 30508414
Alignment:
| Q |
1 |
ttgaggaagagtgggagtttcagtgtaagatcaagcttggaaactacggggcccaccgtgactgtcggacaagttactgaagttaacaaggacacgtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30508256 |
ttgaggaagagtgggagtttcagtgtaagatcaagcttggaaactacgggccccaccgtgactgtcggacaagttactgaagttaataaggacacgtttt |
30508355 |
T |
|
| Q |
101 |
ggcccatcgttaatgccgccggtgataaaaccgtcgtgctcgacatgtacactcaatgg |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30508356 |
ggcccatcgttaatgccgccggtgataaaaccgtcgtgctcgacatgtacactcaatgg |
30508414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University