View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12346_high_2 (Length: 364)
Name: NF12346_high_2
Description: NF12346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12346_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 1323382 - 1323032
Alignment:
| Q |
11 |
gagatgaagaaaacatttgcaaaaaccacaagaaagcttgtattctatttagcatgttagaatcatcacaatatgcttcatacatttaagaattttcact |
110 |
Q |
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| T |
1323382 |
gagaagaagaaaccatttgcaaaaaccacaagaaagcttgtattctatttagcatgttagcatcatcacaatatgcttcaaacatttaagaattttcact |
1323283 |
T |
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| Q |
111 |
gcatcaaacattaccaaagtttacaaatcctaaaagaacatcaaaccagccagccataactatacaactgtttaaagatatttgaaaaataaacaaataa |
210 |
Q |
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| T |
1323282 |
gcatcaaacattaccaaagtttacaaatcctaaaagaacatcaaaccagctagccataactatacaactatttaaatatatttgaaaaataaacaaataa |
1323183 |
T |
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| Q |
211 |
acgcatacacataatttctgccatcttaatctataataatctgtcaatattatattccaccaccactaataatagaggggaacagaatactatctaagaa |
310 |
Q |
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| T |
1323182 |
acgcatacacacaatttctgccatcttaatctataataatctgtcaatattatattccaccaccgctaataatagaggggaaaagaatactatctaagaa |
1323083 |
T |
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| Q |
311 |
tcaccaattagatgatgcaacaaacatttttcttgatcaacataatgttaaacc |
364 |
Q |
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| T |
1323082 |
tcaccaattagatgatgcaacaaaca---ttcttgatcaacattatgttaaacc |
1323032 |
T |
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