View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12347_high_12 (Length: 334)

Name: NF12347_high_12
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12347_high_12
NF12347_high_12
[»] chr5 (3 HSPs)
chr5 (19-334)||(33496077-33496391)
chr5 (19-165)||(42577922-42578067)
chr5 (19-96)||(23150046-23150122)
[»] chr2 (1 HSPs)
chr2 (19-331)||(4243157-4243467)
[»] chr3 (3 HSPs)
chr3 (19-163)||(52966015-52966158)
chr3 (19-117)||(51141346-51141443)
chr3 (19-102)||(2500436-2500518)
[»] chr1 (4 HSPs)
chr1 (19-117)||(14647398-14647495)
chr1 (19-165)||(51492926-51493071)
chr1 (19-108)||(13189541-13189629)
chr1 (19-100)||(20128412-20128492)
[»] chr7 (4 HSPs)
chr7 (19-99)||(31801259-31801338)
chr7 (19-99)||(46598576-46598655)
chr7 (19-102)||(12351958-12352040)
chr7 (19-96)||(41146531-41146607)
[»] chr4 (1 HSPs)
chr4 (19-96)||(32498323-32498399)
[»] chr8 (2 HSPs)
chr8 (19-99)||(9181955-9182034)
chr8 (19-99)||(11626239-11626318)
[»] chr6 (1 HSPs)
chr6 (19-99)||(10160179-10160258)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 33496391 - 33496077
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataaatctatgt 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33496391 aatccaagctacacatggaggagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataaatctatgt 33496292  T
Q  119 accatgccttgaatacgtaatctttcttctcacaaaccttcaactcctatgtcgtctcttcatgaagatcttacagtgaattacttgttgaatacggaag 218  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  33496291 accatgccatgaatacgtaatctttcttctcacaaaccttcaactcctatgccgtctcttcatgaagatcttacagtgaattacttgctgaat-cggaag 33496193  T
Q  219 gcctttcttggaaccaatagatagttacatccattttcaatccccaagacgatgctgctatactctccatccctctccataaccgtctgttgtttgacac 318  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33496192 gcctctcttggaaccaatagatagttacatccattttcaatccccaagacgatgctgctatactctccatccctctccataaccgtctgttgtttgacac 33496093  T
Q  319 cagaatatggaaataa 334  Q
    ||||||||||||||||    
T  33496092 cagaatatggaaataa 33496077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 42578067 - 42577922
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataaatctatgt 118  Q
    ||||||||||||||||||| |||||  ||||| |||||| | ||| || || ||||||||||||||||||||||||||||| || || |||||| ||||     
T  42578067 aatccaagctacacatggaggagtctttggagcactcaa-tctttacttaccttgggtcatagatggaagattggagatggttcaaacataaatgtatgg 42577969  T
Q  119 accatgccttgaatacgtaatctttcttctcacaaaccttcaactcc 165  Q
     | |||||||| |||||||   || |||| |||||||||||||||||    
T  42577968 tctatgccttggatacgtagcattccttcacacaaaccttcaactcc 42577922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 23150046 - 23150122
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggaga 96  Q
    |||||||| |||||||||| ||||| ||||||||||| ||| ||| || || ||||| ||||| ||||| ||||||||    
T  23150046 aatccaagttacacatggaggagtctatggagtactc-aatctttacttaccttgggccataggtggaaaattggaga 23150122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 4243157 - 4243467
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataaatctatgt 118  Q
    ||||||||||| ||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  4243157 aatccaagctatacatggaggagtctatggagtactcaa-tctttgctcactttgggtcatagatggaa-attggagatggctcgaaaataaatctatgg 4243254  T
Q  119 accatgccttgaatacgtaatctttcttctcacaaaccttcaactcctatgtcgtctcttcatgaagatcttacagtgaattacttgttgaatacggaag 218  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||||||||| || ||| ||||||||| ||||||||||||||||||||||||  |||||    
T  4243255 accatgccttggatacgtaatcttccttctcacaaaccctcaactcctatgccggctcatcatgaagaccttacagtgaattacttgttgaatctggaag 4243354  T
Q  219 gcctttcttggaaccaatagatagttacatccattttcaatccccaagacgatgctgctatactctccatccctctccataaccgtctgttgtttgacac 318  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||    
T  4243355 gcctctcttggaaccaacaaatagttacatccattttcaatccccaagacgctgctgctatactctccatccctctacataaccgtctgttgtctgacac 4243454  T
Q  319 cagaatatggaaa 331  Q
    |||||||||||||    
T  4243455 cagaatatggaaa 4243467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 52966158 - 52966015
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataaatctatgt 118  Q
    ||||||||||||||||||| |||||  ||||| |||||| | ||| || || ||||||||||||||||||||||||||||| || || |||||| ||||     
T  52966158 aatccaagctacacatggaggagtctttggagcactcaa-tctttacttaccttgggtcatagatggaagattggagatggttcaaacataaatgtatgg 52966060  T
Q  119 accatgccttgaatacgtaatctttcttctcacaaaccttcaact 163  Q
     | |||||||| |||||||   || |||| || ||||||||||||    
T  52966059 tctatgccttggatacgtagcattccttcacataaaccttcaact 52966015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 51141443 - 51141346
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataaatctatg 117  Q
    |||||||| ||||||||||  | ||  |||||||||||| ||| |||| || ||||||||||||||||||||||||||||| || ||||||||| ||||    
T  51141443 aatccaagttacacatggagaattctttggagtactcaa-tatctgcttaccttgggtcatagatggaagattggagatggttcaaaaataaatgtatg 51141346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 2500518 - 2500436
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctc 102  Q
    |||||||| |||||||||| ||||| ||||||||||| ||| ||| || || ||||| ||||| ||||| |||||||| |||||    
T  2500518 aatccaagttacacatggaggagtctatggagtactc-aatctttacttaccttgggccataggtggaaaattggagacggctc 2500436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 14647398 - 14647495
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataaatctatg 117  Q
    ||||||||||||| ||||| |||||  |||||||||||| | | |||| || ||||||||||||||||| ||||||||||| || ||||||||| ||||    
T  14647398 aatccaagctacatatggaggagtctttggagtactcaa-tctctgcttaccttgggtcatagatggaaaattggagatggttcaaaaataaatgtatg 14647495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 51493071 - 51492926
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaataaatctatgt 118  Q
    |||||||||||| |||||| | |||  ||||| |||||| | ||| || || ||||||||||||||||||||||||| ||| || || |||||| ||||     
T  51493071 aatccaagctacgcatggaggggtctttggagcactcaa-tctttacttaccttgggtcatagatggaagattggagctggttcaaacataaatgtatgg 51492973  T
Q  119 accatgccttgaatacgtaatctttcttctcacaaaccttcaactcc 165  Q
       |||||||| |||| |||  || |||| || ||||||||||||||    
T  51492972 tatatgccttggatacataacattccttcacataaaccttcaactcc 51492926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 13189629 - 13189541
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctcgaaaat 108  Q
    |||||||||||||| ||||  ||||  ||||||||||||  |||| || || |||||| |||||||||| |||||||||||||| |||||    
T  13189629 aatccaagctacacttggagaagtctttggagtactcaac-atttacttaccttgggttatagatggaaaattggagatggctctaaaat 13189541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 20128412 - 20128492
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggc 100  Q
    |||||||||||||| |||| ||||| ||||||||| | ||| | | || || ||||| ||||||||||||||||| ||||||    
T  20128412 aatccaagctacacttggaggagtctatggagtac-ccaatctcttcttaccttgggacatagatggaagattggtgatggc 20128492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 31801259 - 31801338
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatgg 99  Q
    ||||||||||| || |||| |||   ||||||||||||| | ||| || |||||||| |||||||||||||||||||||||    
T  31801259 aatccaagctatacttggaggagcttatggagtactcaa-tctttacttactttgggccatagatggaagattggagatgg 31801338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 46598576 - 46598655
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatgg 99  Q
    ||||||||||| || |||| |||   ||||||||||||| | ||| || |||||||| |||||||||||||||||||||||    
T  46598576 aatccaagctatacctggaggagcttatggagtactcaa-tctttacttactttgggccatagatggaagattggagatgg 46598655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 12352040 - 12351958
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatggctc 102  Q
    |||||||| |||||||||| ||||| ||||||||||| ||| ||| || || ||||| ||||| ||||| |||||||| |||||    
T  12352040 aatccaagttacacatggaggagtctatggagtactc-aatctttacttaccttgggccatagctggaaaattggagacggctc 12351958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 41146531 - 41146607
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggaga 96  Q
    |||||||| |||||||||| ||||| ||||||||||| ||| ||| || || ||||| ||||| ||||| ||||||||    
T  41146531 aatccaagttacacatggaggagtctatggagtactc-aatctttacttaccttgggccataggtggaaaattggaga 41146607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 32498323 - 32498399
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggaga 96  Q
    |||||||| |||||||||| ||||| ||||||||||| ||| ||| || || ||||| ||||| ||||| ||||||||    
T  32498323 aatccaagttacacatggaggagtctatggagtactc-aatctttacttaccttgggccataggtggaaaattggaga 32498399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 9182034 - 9181955
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatgg 99  Q
    |||||||| || ||||||| ||||| ||||||||| ||| | ||| || || |||||||||||||||||||| || |||||    
T  9182034 aatccaagttatacatggaggagtctatggagtacacaa-tctttacttaccttgggtcatagatggaagataggtgatgg 9181955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 11626239 - 11626318
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatgg 99  Q
    |||||||| || ||||||| ||||| ||||||||| ||| | ||| || || |||||||||||||||||||| || |||||    
T  11626239 aatccaagttatacatggaggagtctatggagtacacaa-tctttacttaccttgggtcatagatggaagataggtgatgg 11626318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 10160258 - 10160179
Alignment:
Q  19 aatccaagctacacatggacgagtccatggagtactcaaatatttgctcactttgggtcatagatggaagattggagatgg 99  Q
    |||||||| || ||||||| ||||| ||||||||| ||| | ||| || || |||||||||||||||||||| || |||||    
T  10160258 aatccaagttatacatggaggagtctatggagtacacaa-tctttacttaccttgggtcatagatggaagataggtgatgg 10160179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University