View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12347_high_6 (Length: 452)
Name: NF12347_high_6
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 287 - 436
Target Start/End: Original strand, 31181642 - 31181792
Alignment:
| Q |
287 |
atcaaacaaccttaaccttataaaatctct-gtctcaaacatccttattctctccgaacatatcaatggcaacaaaacaaccactctggtctccacctga |
385 |
Q |
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| T |
31181642 |
atcaaacaaccttaaccgtataaaatctcttgtctcaaacatccttattctctccgaacatgtcaatggcaacaaaacaaccactctggtctccacctga |
31181741 |
T |
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| Q |
386 |
gttcgaagcttccgccttcggtttccccactgagttcccctacgagtttga |
436 |
Q |
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| T |
31181742 |
gttcgaagcttccgccttcggtttccccactgagttcccctacgagtttga |
31181792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 31181383 - 31181472
Alignment:
| Q |
19 |
gccattcttccagttgttctcataaactcttcacccccttctaatttaattcatttattttcaccttccacaaccccattttctcattgt |
108 |
Q |
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| T |
31181383 |
gccattcttccagttgttctcataaactcttcacccccttctaatttaattcatttattttcaccttccacaaccccattttctcattgt |
31181472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 31181509 - 31181566
Alignment:
| Q |
155 |
catcactgtcttaaacta-ctagcttcaaaccttaataaaagcagattgtcttcaaca |
211 |
Q |
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| T |
31181509 |
catcactgtcttaaactaactagcttcaaaccttaataaaagcagattgtcttcaaca |
31181566 |
T |
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