View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12347_high_7 (Length: 448)

Name: NF12347_high_7
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12347_high_7
NF12347_high_7
[»] chr1 (12 HSPs)
chr1 (17-432)||(23896595-23897010)
chr1 (22-155)||(25611722-25611855)
chr1 (18-187)||(24512229-24512401)
chr1 (47-155)||(24234114-24234222)
chr1 (31-123)||(24635570-24635662)
chr1 (46-131)||(25869445-25869530)
chr1 (27-123)||(24247301-24247397)
chr1 (374-414)||(24512603-24512643)
chr1 (264-414)||(24233840-24233990)
chr1 (356-414)||(24635267-24635325)
chr1 (27-123)||(51831606-51831702)
chr1 (54-123)||(45693643-45693712)
[»] scaffold0015 (1 HSPs)
scaffold0015 (30-131)||(41133-41234)
[»] chr7 (1 HSPs)
chr7 (25-155)||(1421900-1422030)
[»] scaffold1004 (1 HSPs)
scaffold1004 (47-105)||(1397-1455)
[»] chr4 (1 HSPs)
chr4 (373-416)||(11032453-11032496)
[»] chr3 (2 HSPs)
chr3 (50-117)||(1941334-1941401)
chr3 (27-131)||(43991242-43991346)
[»] scaffold0760 (1 HSPs)
scaffold0760 (47-105)||(3891-3949)


Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Complemental strand, 23897010 - 23896595
Alignment:
Q  17 gtgactcatattccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctc 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||| |||||||||    
T  23897010 gtgactcatattccgtttgatctcgtggttgaaatcctgtgcagactccctgtcaagttcctcctacaattccgctgcgtctgcaagtcatggaattctc 23896911  T
Q  117 taatctcgaatgatcagaaattcttcaagaaacaccttctcttatcaaccaaacgcaaacacctcgtcacaagctcattgcactcgtcaagaaaagagtt 216  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23896910 taatctcgaaggatcagaaattcttcaagaaacaccttctcttatcaaccaaacgcaaacacctcgtcacaagctcattgcactcgtcaagaaaagagtt 23896811  T
Q  217 atctgtaatgtcttactcaattgactctattttcacatctgaaactgccacacaactcgattactctcccattaatacagattgtatggatcacctcatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  23896810 atctgtaatgtcttactcaattgactctattttcacatctgaaactgccacacaactcgattactctcccattaatacagattgtatggatcgactcatt 23896711  T
Q  317 gcttcttgcgatggtctcatttgttttgcaactgatactcatcttgccgttatttcgaacccttccattagaaaattaaagaaattaccctctttagaac 416  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||    
T  23896710 gcttcttgcgacggtctcatttgttttgcaattgatactcatcttgccgttacttggaacccttccattagaaaattaaagaaattacccactttagaac 23896611  T
Q  417 tacttcccaaaaaatt 432  Q
    ||| ||||||||||||    
T  23896610 tacctcccaaaaaatt 23896595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 22 - 155
Target Start/End: Complemental strand, 25611855 - 25611722
Alignment:
Q  22 tcatattccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatc 121  Q
    |||| ||||||||||| |||| ||||||||||| ||||| ||||| || ||||||||||| |||||| | ||||||||||||||| |||||||||||||     
T  25611855 tcatgttccgtttgatgtcgtcgttgaaatcctttgtaggctcccggtcaagttcctccttcaattctgttgcgtctgcaagtcatggaattctctaata 25611756  T
Q  122 tcgaatgatcagaaattcttcaagaaacaccttc 155  Q
    ||||||||||  || ||  |||||||||||||||    
T  25611755 tcgaatgatcccaattttgtcaagaaacaccttc 25611722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 24512229 - 24512401
Alignment:
Q  18 tgactcatattccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctct 117  Q
    |||||||||||| |||||||||||||  |||||| || ||||||||||| |  ||||||||| |||||||| | ||||||||||||||| ||||||||||    
T  24512229 tgactcatattctgtttgatctcgtgactgaaattctatgtagactccctgccaagttcctcgtgcaattcggatgcgtctgcaagtcatggaattctct 24512328  T
Q  118 aatctcgaatgatcagaaattcttcaagaaacaccttc---tcttatcaaccaaacgcaaacacctcgtcaca 187  Q
     ||||| || ||||   |||||  ||| ||| ||||||   | | | ||||||||||||||||||| ||||||    
T  24512329 gatctcaaaagatctcgaattcgccaaaaaataccttcgcatgtcaacaaccaaacgcaaacaccttgtcaca 24512401  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 24234222 - 24234114
Alignment:
Q  47 gaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctcgaatgatcagaaattcttcaaga 146  Q
    |||||| ||||||||||||| || || |||||||| ||||||||||| ||||| |||||| ||||||| || ||||| |||||||  ||||||  ||| |    
T  24234222 gaaatcttgtgtagactccctgtcaaattcctcctacaattccgctgtgtctgtaagtcatggaattcgcttatctctaatgatcctaaattcaccaaaa 24234123  T
Q  147 aacaccttc 155  Q
    |||||||||    
T  24234122 aacaccttc 24234114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 24635662 - 24635570
Alignment:
Q  31 gtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctc 123  Q
    |||||||||| ||  |||||| || ||||||||||| |  ||||||||| |||||||| | ||||||||||||||| |||||||||| |||||    
T  24635662 gtttgatctcatgactgaaattctatgtagactccctgccaagttcctcatgcaattctgatgcgtctgcaagtcatggaattctctgatctc 24635570  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 25869530 - 25869445
Alignment:
Q  46 tgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctcgaatgatc 131  Q
    ||||||||| || ||| ||||| | || |||||| ||||| |||||||| | ||||||||| |||||||||||||||| |||||||    
T  25869530 tgaaatcctatgcagattccccatcaaattcctcatgcaactccgctgcatttgcaagtcatggaattctctaatctcaaatgatc 25869445  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 24247397 - 24247301
Alignment:
Q  27 ttccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctc 123  Q
    ||||||| ||| |||||| |||||||||||| |||||||| || ||||  ||| | | ||||||||||||||||||||   |||||||||| |||||    
T  24247397 ttccgttggatgtcgtggctgaaatcctgtgcagactccctgtcaagtgtctcttacgattccgctgcgtctgcaagttgtggaattctctcatctc 24247301  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 24512603 - 24512643
Alignment:
Q  374 aacccttccattagaaaattaaagaaattaccctctttaga 414  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  24512603 aacccttccattagaaaattaaagaagttaccctctttaga 24512643  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 414
Target Start/End: Complemental strand, 24233990 - 24233840
Alignment:
Q  264 ccacacaactcgattactctcccattaatacagattgtatggatcacctcattgcttcttgcgatggtctcatttgttttgcaactgatactcatcttgc 363  Q
    ||||||||||||||||||||||||||| ||||   ||   ||||  |||||||||||| ||||| |||||| |||||||||  |  |||   |  || ||    
T  24233990 ccacacaactcgattactctcccattattacatcatggcaggatggcctcattgcttcatgcgacggtctcctttgttttgtcatcgatcaacgcctcgc 24233891  T
Q  364 cgttatttcgaacccttccattagaaaattaaagaaattaccctctttaga 414  Q
     ||| | |  ||||||| |||||||||| ||||||||||||||||||||||    
T  24233890 tgttctctataacccttgcattagaaaagtaaagaaattaccctctttaga 24233840  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 24635325 - 24635267
Alignment:
Q  356 catcttgccgttatttcgaacccttccattagaaaattaaagaaattaccctctttaga 414  Q
    |||||||| ||| |||  ||||||||||| |||||||||||||| ||||||||||||||    
T  24635325 catcttgcggttctttataacccttccatcagaaaattaaagaagttaccctctttaga 24635267  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 51831606 - 51831702
Alignment:
Q  27 ttccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctc 123  Q
    ||||||||||||||||||| | |||||||||  | ||||| || || || ||||| ||| |||| || |||||||||||| |||| ||||| |||||    
T  51831606 ttccgtttgatctcgtggtagtaatcctgtgccggctcccagtgaaatttctccttcaactccgttgtgtctgcaagtcatggaactctcttatctc 51831702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 45693712 - 45693643
Alignment:
Q  54 tgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctc 123  Q
    ||||||||||||| || ||||| || || ||| |||||||| | ||||||||  ||||||||||||||||    
T  45693712 tgtgtagactcccggtcaagtttcttctacaactccgctgcatatgcaagtcgtggaattctctaatctc 45693643  T

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Target: scaffold0015 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 41234 - 41133
Alignment:
Q  30 cgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctcgaatga 129  Q
    |||||||||| |||| ||||||||| ||| ||||||| || || |||||||| |||||||| ||||||||||||||| |||||||||||||||| |||||    
T  41234 cgtttgatcttgtggctgaaatcctatgtcgactccctgtgaaattcctcctacaattccgttgcgtctgcaagtcatggaattctctaatctcaaatga 41135  T
Q  130 tc 131  Q
    ||    
T  41134 tc 41133  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 1422030 - 1421900
Alignment:
Q  25 tattccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctcg 124  Q
    |||||||||||||||||||   |||||| ||||||||||||| || || |||||||| |||||||| |||||||| |||||  |||||| |||||||||     
T  1422030 tattccgtttgatctcgtgaaagaaatcttgtgtagactcccagtgaaattcctcctacaattccgttgcgtctgtaagtcgtggaattttctaatctca 1421931  T
Q  125 aatgatcagaaattcttcaagaaacaccttc 155  Q
    |||||||  ||||||  ||| ||||||||||    
T  1421930 aatgatcccaaattcgccaaaaaacaccttc 1421900  T

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Target: scaffold1004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 1397 - 1455
Alignment:
Q  47 gaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtc 105  Q
    ||||||||||||||||| ||||| || || ||||| ||||| |||||||||||||||||    
T  1397 gaaatcctgtgtagacttcccgtgaaattactccttcaatttcgctgcgtctgcaagtc 1455  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 11032453 - 11032496
Alignment:
Q  373 gaacccttccattagaaaattaaagaaattaccctctttagaac 416  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||    
T  11032453 gaacccttccataagaaaatttaagaaattaccctctttggaac 11032496  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 1941401 - 1941334
Alignment:
Q  50 atcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctct 117  Q
    ||||| |||||||||||||| ||| | ||||| |||||||| ||||| ||||||||  ||||||||||    
T  1941401 atcctctgtagactccccgtgaagcttctccttcaattccggtgcgtttgcaagtcgtggaattctct 1941334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 43991242 - 43991346
Alignment:
Q  27 ttccgtttgatctcgtggttgaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtcagggaattctctaatctcgaa 126  Q
    |||||||||| || ||||  ||||||||||||||| | || || ||| | ||| ||||| |||  ||| ||||||||||  |||| ||||| ||||||||    
T  43991242 ttccgtttgaacttgtggaagaaatcctgtgtagattaccggtgaagatactcatgcaactccaatgcatctgcaagtcctggaaatctcttatctcgaa 43991341  T
Q  127 tgatc 131  Q
    |||||    
T  43991342 tgatc 43991346  T

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Target: scaffold0760 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 3891 - 3949
Alignment:
Q  47 gaaatcctgtgtagactccccgttaagttcctcctgcaattccgctgcgtctgcaagtc 105  Q
    |||||||||||||| || ||||| || || ||||| ||||| |||||||||||||||||    
T  3891 gaaatcctgtgtaggcttcccgtgaaattactccttcaatttcgctgcgtctgcaagtc 3949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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