View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12347_high_9 (Length: 379)
Name: NF12347_high_9
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 15483976 - 15483633
Alignment:
| Q |
19 |
attcatcggttcgtaaattttgcagggttcttgcttgtggaaatgtcacgtcagcagtggattctattgtttgtttaagagtcagtgtttgttttgtcaa |
118 |
Q |
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| T |
15483976 |
attcatcggttcgtaaatttggcagggttcttgcttgtggacatgtcacgtcagcagcggattctattgtttgtttaagagtcagtgtttgttttgtcaa |
15483877 |
T |
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| Q |
119 |
aaaataaaagaatcactgtttgttaatgttgtaatattgtgttattgagtcagcttttgttatgggtgtttacaaaatagtcgtgtgtatttcaatatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15483876 |
aaaataaaagaatcactgtttgttaatgttgtaatattgtgttattgagtcagcttttgttatgggtgtttacaaaatagtcgtgtgtatttcaatatgt |
15483777 |
T |
|
| Q |
219 |
attattcaataaaatttgtgagatcgttatgttcattttctaagttctaaaacaattttattttctactcttgttgtgagtgatggtataatcagtgtgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15483776 |
attattcaataaaatttgtgagatcgttatgttcattttctaagttctaaaacaattttattttctactcttgttgtgagtgatggtataatcagtgtgt |
15483677 |
T |
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| Q |
319 |
aattcatggaagcgagtgcttgttccaacaaattggtataagtg |
362 |
Q |
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| T |
15483676 |
aattcatagaagcgagtgcttgttccaacaaattggtataagtg |
15483633 |
T |
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