View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12347_low_1 (Length: 588)
Name: NF12347_low_1
Description: NF12347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12347_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 20 - 578
Target Start/End: Original strand, 4502358 - 4502916
Alignment:
| Q |
20 |
gggccagctatgataagaagataaccagagaagtggaaacttaatgacattaaggttttgacatgtagtcacaatatttaggagaaaaattgagcataat |
119 |
Q |
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| T |
4502358 |
gggccagctatgataagaagataaccagagaagtggaaacttaatgacattaaggttttgacatgtagtcacaatatttaggagaaaaattgagcataat |
4502457 |
T |
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| Q |
120 |
tgatgactttggaatccgttaaggaaattcgggtttgaaagtttgtaaagtatatacattccacgaaggaactggtcataatccaacatgcatactgaat |
219 |
Q |
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| T |
4502458 |
tgatgactttggaatccgttaaggaaattcgggtttgaaagtttgtaaagtatatacattccacgaaggaactggtcataatccaacatgcatactgaat |
4502557 |
T |
|
| Q |
220 |
actaaaacacctgtgacaacgatgttgctgtaaatatcagccttatgtttagcaccttttacttgtgttacgcgggacttttgctgttacagaaaggctt |
319 |
Q |
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| T |
4502558 |
actaaaacacctgtgacaacgatgttgctgtaaatatcagccttatgtttagcaccttttacttgtgttacgccggacttctgctgttacagaaaggctt |
4502657 |
T |
|
| Q |
320 |
taatatttttactatagggactttgcatctgtgttacagtacctagtaaaatgtgatacgtaaacctcaaaatgtgagattttcatattggatacattat |
419 |
Q |
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| T |
4502658 |
taatattttttctatagggactttgcatctgtgttacagtacctagtaaaatgtgatacgtaaacctcaaaatgtgagattttcatattggatacattat |
4502757 |
T |
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| Q |
420 |
acatgctaatatagttaaagcctcattttcagaaagaaagnnnnnnngctaaaccttaattgtgcttagcaaggttttcaggttaatggtagtgtagtac |
519 |
Q |
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| T |
4502758 |
acatgctaatatagttaaagcctcattttcagaaagaaagaaaaaaagctaaaccttaattgtgcttagcaaggttttcaggttaatggtagtgtagtac |
4502857 |
T |
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| Q |
520 |
cagattttatggaaaaatgagtgctactgctacaacgtaaaaataaacaaacacaggtt |
578 |
Q |
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| T |
4502858 |
cagattttatggaaaaatgagtgctactgctacaacgtaaaaataaacaaacacaggtt |
4502916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 553
Target Start/End: Original strand, 4496954 - 4496990
Alignment:
| Q |
517 |
taccagattttatggaaaaatgagtgctactgctaca |
553 |
Q |
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| T |
4496954 |
taccagattttatggaaaaattagtgctactactaca |
4496990 |
T |
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